commit: 0c0f7543e2f922af5b5198b2abb6d9c32b6be5cb
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 11 14:55:09 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Oct 11 14:55:09 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0c0f7543
sci-biology/bcftools: drop 1.10.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/bcftools/Manifest | 1 -
sci-biology/bcftools/bcftools-1.10.2.ebuild | 43 -----------------------------
2 files changed, 44 deletions(-)
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
index 958ce72a852..bfc2b78ed04 100644
--- a/sci-biology/bcftools/Manifest
+++ b/sci-biology/bcftools/Manifest
@@ -1,2 +1 @@
-DIST bcftools-1.10.2.tar.bz2 3702679 BLAKE2B
51acce94d463868562199206504dc8afb50c671c11139c5a96f52cedf135bb7a46115c69411b9943b970a2395e3c866275c85e345a4a40a90194d1094698314e
SHA512
f07e405efa16b9b1b18521342df3eaf840ed1b3028b736a6b4d139012ea85769ddfb3cd3a2c94958415d984d07805dfcd3d4bbec0db401b3f071b861a56d1300
DIST bcftools-1.13.tar.bz2 6906796 BLAKE2B
4c02d65733d28684f9a976e082913d79dbac4463c9471fc26d8ee0cbe7ad25af429cf7d01b9771bc34309386ccd2d77ebd54fbf64ed4183d1c2ebfbc0e727afb
SHA512
aa533233dd2fec2279859204be39430c4fc630137a91d57fe917fd7a220044d5202ddc3d44bcffc3bd5bd5bb64f6ea4c8ec3c31e5e1ec72399998f1e6f23a55a
diff --git a/sci-biology/bcftools/bcftools-1.10.2.ebuild
b/sci-biology/bcftools/bcftools-1.10.2.ebuild
deleted file mode 100644
index a484f69133e..00000000000
--- a/sci-biology/bcftools/bcftools-1.10.2.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{8..9} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org";
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2";
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- dev-lang/perl
- $(python_gen_cond_dep '
- dev-python/matplotlib[${PYTHON_USEDEP}]
- ')
- =sci-libs/htslib-${PV}*:=
- sys-libs/zlib:=
- ${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- default
-
- python_fix_shebang misc/{guess-ploidy,plot-roh}.py
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --disable-bcftools-plugins \
- --disable-libgsl \
- --with-htslib=system
-}
