commit: 4aaaee31a3160848f6d3e665695c366a5a02cb11 Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com> AuthorDate: Sun Oct 17 13:14:52 2021 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Oct 17 13:14:52 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4aaaee31
sci-biology/arcs: new package Scaffolding genome sequence assemblies using linked (from 10x Genomics chromium) or long read sequencing data (from Pacific Biosystems, Oxford Nanopore). Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com> sci-biology/arcs/arcs-1.2.2.ebuild | 35 +++++++++++++++++++++++++++++++++++ sci-biology/arcs/metadata.xml | 12 ++++++++++++ 2 files changed, 47 insertions(+) diff --git a/sci-biology/arcs/arcs-1.2.2.ebuild b/sci-biology/arcs/arcs-1.2.2.ebuild new file mode 100644 index 000000000..44a77c335 --- /dev/null +++ b/sci-biology/arcs/arcs-1.2.2.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Scaffold genome sequence assemblies by Chromium/PacBio/Naopore reads" +HOMEPAGE="https://github.com/bcgsc/arcs"; +SRC_URI="https://github.com/bcgsc/arcs/releases/download/v${PV}/${P}.tar.gz"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +IUSE="minimal" + +# TODO: fix this +# FileNotFoundError: [Errno 2] No such file or directory +# happens even with --install +RESTRICT="test" + +RDEPEND=" + dev-libs/boost + dev-cpp/sparsehash + !minimal? ( + sci-biology/abyss + sci-biology/tigmint + ) +" +# !minimal? ( sci-biology/LINKS ) + +src_install(){ + default + insinto /usr/share/"${PN}" + doins -r Examples +} diff --git a/sci-biology/arcs/metadata.xml b/sci-biology/arcs/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/arcs/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
