commit: f4a311c42b306a1a49fa91c28203f388d324d326 Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com> AuthorDate: Sun Oct 17 15:42:43 2021 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Oct 17 15:42:43 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f4a311c4
sci-biology/LINKS: new package The LINKS perl script probably needs some sed hackery to eventually start using system-wide btl_bloomfilter file BloomFilter.i and also perl's CORE/EXTERN.h. Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com> sci-biology/LINKS/LINKS-1.8.7.ebuild | 25 +++++++++++++++++++++++++ sci-biology/LINKS/metadata.xml | 12 ++++++++++++ 2 files changed, 37 insertions(+) diff --git a/sci-biology/LINKS/LINKS-1.8.7.ebuild b/sci-biology/LINKS/LINKS-1.8.7.ebuild new file mode 100644 index 000000000..e9cf2fbd8 --- /dev/null +++ b/sci-biology/LINKS/LINKS-1.8.7.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads" +HOMEPAGE="https://github.com/bcgsc/LINKS"; +SRC_URI="https://github.com/bcgsc/LINKS/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RESTRICT="test" + +RDEPEND=" + >=dev-lang/perl-1.6 + dev-lang/swig + sci-biology/btl_bloomfilter +" + +src_install(){ + dobin bin/LINKS *.pl tools/*.pl + dodoc README.md +} diff --git a/sci-biology/LINKS/metadata.xml b/sci-biology/LINKS/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/LINKS/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
