[gentoo-commits] proj/sci:master commit in: sci-biology/tigmint/

[Andrew Ammerlaan]

commit:     9a13af8737903d7bb70f8667fa53e6056fd3d429
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Wed Oct 20 13:12:14 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Oct 20 13:12:14 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=9a13af87

sci-biology/tigmint: properly install python things

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 ...igmint-1.2.4.ebuild => tigmint-1.2.4-r1.ebuild} | 33 +++++++++++++++-------
 1 file changed, 23 insertions(+), 10 deletions(-)

diff --git a/sci-biology/tigmint/tigmint-1.2.4.ebuild 
b/sci-biology/tigmint/tigmint-1.2.4-r1.ebuild
similarity index 57%
rename from sci-biology/tigmint/tigmint-1.2.4.ebuild
rename to sci-biology/tigmint/tigmint-1.2.4-r1.ebuild
index 1b181ea44..6900ea7aa 100644
--- a/sci-biology/tigmint/tigmint-1.2.4.ebuild
+++ b/sci-biology/tigmint/tigmint-1.2.4-r1.ebuild
@@ -1,9 +1,10 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{8..9} )
+DISTUTILS_USE_SETUPTOOLS=no
 
 inherit distutils-r1
 
@@ -13,9 +14,10 @@ 
SRC_URI="https://github.com/bcgsc/tigmint/releases/download/v${PV}/${P}.tar.gz";
 
 LICENSE="GPL-3"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
 
 RESTRICT="test"
+PROPERTIES="test_network"
 
 RDEPEND="
        dev-python/intervaltree[${PYTHON_USEDEP}]
@@ -29,10 +31,8 @@ RDEPEND="
 
 distutils_enable_tests pytest
 
-# install the executable into /usr/bin
-# BUG: the read_fasta.py should be installed into python modules
-#   so it can be imported into python
 src_prepare(){
+       # install the executable into /usr/bin
        sed -i Makefile -e 's#prefix=/usr/local#prefix=/usr#'
        default
 }
@@ -44,12 +44,25 @@ src_configure(){
 
 # do not run src_compile step as it runs git, makefile2graph, gsed, tred
 
-src_install(){
-       default
-       distutils-r1_src_install
+python_install() {
+       # This is a bit unorthodox, but it allows us to get both a symlink from
+       # /usr/bin to our script using the correct python implementation
+       # *and* to import it from the python shell
+       python_domodule bin/*.py
+       python_domodule bin/tigmint-arcs-tsv
+       python_domodule bin/tigmint-cut
+
+       python_doscript bin/*.py
+       python_doscript bin/tigmint-arcs-tsv
+       python_doscript bin/tigmint-cut
+}
+
+python_install_all() {
+       dobin bin/tigmint
+       dobin bin/tigmint-make
 }
 
 src_test(){
        default
-       python_foreach_impl python_test
+       distutils-r1_src_test
 }