commit: 5db6563203432be7454b285bba50fc79daaac21d Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com> AuthorDate: Mon Nov 29 11:41:16 2021 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Nov 29 11:41:16 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5db65632
sci-biology/LINKS: remove keywords This package is supposed to be executed from within compiled source tree. See comments in the ebuild what needs to be fixed. https://github.com/bcgsc/LINKS/pull/59 https://github.com/bcgsc/LINKS/issues/31 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com> sci-biology/LINKS/LINKS-1.8.7.ebuild | 31 ++++++++++++++++++++++++++++--- 1 file changed, 28 insertions(+), 3 deletions(-) diff --git a/sci-biology/LINKS/LINKS-1.8.7.ebuild b/sci-biology/LINKS/LINKS-1.8.7.ebuild index 5009e9922..898898b94 100644 --- a/sci-biology/LINKS/LINKS-1.8.7.ebuild +++ b/sci-biology/LINKS/LINKS-1.8.7.ebuild @@ -9,17 +9,42 @@ SRC_URI="https://github.com/bcgsc/LINKS/archive/refs/tags/v${PV}.tar.gz -> ${P}. LICENSE="GPL-3" SLOT="0" -KEYWORDS="~amd64 ~x86" +KEYWORDS="" RESTRICT="test" RDEPEND=" >=dev-lang/perl-1.6 dev-lang/swig - sci-biology/btl_bloomfilter + dev-util/cppcheck " +# sci-biology/btl_bloomfilter + +src_compile(){ + cd btllib | die "Cannot chdir to bundled btllib/" + ./compile-wrappers || die "Failed to compile bundled btllib" + # baah, this also does some kind of install + # SUCCESS: sdsl was installed successfully! + # The sdsl include files are located in $foo'/LINKS/btllib/external/sdsl-lite/installdir/include'. + # The library files are located in $foo'/LINKS/btllib/external/sdsl-lite/installdir/lib'. + # + # Sample programs can be found in the examples-directory. + # A program 'example.cpp' can be compiled with the command: + # g++ -std=c++11 -DNDEBUG -O3 [-msse4.2] \ + # -I$foo/LINKS/btllib/external/sdsl-lite/installdir/include -L$foo/LINKS/btllib/external/sdsl-lite/installdir/lib \ + # example.cpp -lsdsl -ldivsufsort -ldivsufsort64 + # + # Tests in the test-directory + # A cheat sheet in the extras/cheatsheet-directory. + # Have fun! + # [2/3] Installing files. + # Installing extras/python/_btllib.so to $foo/LINKS/btllib/python + # Installing $foo/LINKS/btllib/extras/python/btllib.py to $foo/LINKS/btllib/python +} src_install(){ - dobin bin/LINKS *.pl releases/links_v1.8.5/tools/*.pl + sed -e 's#$(bin)/../src/##' -i bin/LINKS-make || die + sed -e 's#perl $(bin)/##' -i bin/LINKS-make || die + dobin bin/LINKS bin/LINKS-make src/LINKS_CPP bin/*.pl tools/*.pl dodoc README.md }
