commit: b0354031c42e401506e5c480838c528586eabd71
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 10:31:08 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 10:31:08 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0354031
sci-biology/subread: bump to 2.0.3
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/subread/files/subread-2.0.1-fno-common.patch | 11 -----------
.../subread/{subread-2.0.1.ebuild => subread-2.0.3.ebuild} | 10 ++++------
2 files changed, 4 insertions(+), 17 deletions(-)
diff --git a/sci-biology/subread/files/subread-2.0.1-fno-common.patch
b/sci-biology/subread/files/subread-2.0.1-fno-common.patch
deleted file mode 100644
index 8f86840c5..000000000
--- a/sci-biology/subread/files/subread-2.0.1-fno-common.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/src/gene-algorithms.h
-+++ b/src/gene-algorithms.h
-@@ -60,7 +60,7 @@ void add_allvote_q(gene_allvote_t* allvote,int qid , int
pos, gene_vote_number_t
-
- unsigned char get_next_char(FILE * fp);
-
--unsigned char * replica_index;
-+extern unsigned char * replica_index;
-
- extern double begin_ftime;
-
diff --git a/sci-biology/subread/subread-2.0.1.ebuild
b/sci-biology/subread/subread-2.0.3.ebuild
similarity index 88%
rename from sci-biology/subread/subread-2.0.1.ebuild
rename to sci-biology/subread/subread-2.0.3.ebuild
index a16d0af5f..624509aa5 100644
--- a/sci-biology/subread/subread-2.0.1.ebuild
+++ b/sci-biology/subread/subread-2.0.3.ebuild
@@ -1,22 +1,20 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
DESCRIPTION="NGS suite for analysis of mapped reads, summary of
exon/intron/gene counts"
HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/"; # no https
SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz";
+S="${S}-source"
LICENSE="GPL-3"
SLOT="0"
+KEYWORDS="~amd64"
DEPEND="sys-libs/zlib"
RDEPEND="${DEPEND}"
-S="${S}-source"
-
-PATCHES=( "${FILESDIR}"/${P}-fno-common.patch )
-
src_prepare(){
default
sed -e "s/-mtune=core2//g" -e "s/-O9//g" -i src/Makefile.Linux || die
