commit: 6131f7f5c445d8c658d59ea1ffa26f1a5f541e0e Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Jan 25 11:16:16 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Jan 25 11:16:16 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6131f7f5
sci-biology/sambamba: remove package We need a D compiler for this, not packaged in ::gentoo Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/sambamba/metadata.xml | 15 ------------- sci-biology/sambamba/sambamba-0.8.0.ebuild | 36 ------------------------------ sci-biology/sambamba/sambamba-9999.ebuild | 28 ----------------------- 3 files changed, 79 deletions(-) diff --git a/sci-biology/sambamba/metadata.xml b/sci-biology/sambamba/metadata.xml deleted file mode 100644 index 3c6df6245..000000000 --- a/sci-biology/sambamba/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">lomereiter/sambamba</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/sambamba/sambamba-0.8.0.ebuild b/sci-biology/sambamba/sambamba-0.8.0.ebuild deleted file mode 100644 index d5f7c1359..000000000 --- a/sci-biology/sambamba/sambamba-0.8.0.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -LZ4_COMMIT="b3692db46d2b23a7c0af2d5e69988c94f126e10a" - -DESCRIPTION="Parallell process SAM/BAM/CRAM files faster than samtools" -HOMEPAGE="https://lomereiter.github.io/sambamba/"; -SRC_URI="https://github.com/lomereiter/sambamba/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://github.com/lz4/lz4/archive/${LZ4_COMMIT}.tar.gz -> lz4-${P}.tar.gz" - -LICENSE="GPL-2+" -SLOT="0" -KEYWORDS="" -IUSE="debug" - -# https://github.com/ldc-developers/gentoo-overlay/tree/master/dev-lang/ldc2 -# -# contains bundled htslib -DEPEND="" -RDEPEND="${DEPEND}" - -src_unpack() { - default - rm -r "${S}/lz4" || die - mv "${WORKDIR}/lz4-${LZ4_COMMIT}" "${S}/lz4" || die -} - -src_compile(){ - if use debug ; then - emake debug all - else - emake all - fi -} diff --git a/sci-biology/sambamba/sambamba-9999.ebuild b/sci-biology/sambamba/sambamba-9999.ebuild deleted file mode 100644 index e655b10b0..000000000 --- a/sci-biology/sambamba/sambamba-9999.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit git-r3 - -DESCRIPTION="Parallell process SAM/BAM/CRAM files faster than samtools" -HOMEPAGE="https://lomereiter.github.io/sambamba/"; -EGIT_REPO_URI="https://github.com/lomereiter/sambamba.git"; - -LICENSE="GPL-2+" -SLOT="0" -KEYWORDS="" -IUSE="debug" - -DEPEND="" -RDEPEND="${DEPEND}" - -# https://github.com/ldc-developers/gentoo-overlay/tree/master/dev-lang/ldc2 - -src_compile(){ - if use debug ; then - emake debug all - else - emake all - fi -}
