commit: d703c5a43cf46b3e7228f8beaeb66b7bba525638
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 26 10:02:49 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Jan 26 10:02:49 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d703c5a4
sci-biology/bambus: fix PMS violation
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/bambus/{bambus-2.33-r1.ebuild => bambus-2.33-r2.ebuild} | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/bambus/bambus-2.33-r1.ebuild
b/sci-biology/bambus/bambus-2.33-r2.ebuild
similarity index 98%
rename from sci-biology/bambus/bambus-2.33-r1.ebuild
rename to sci-biology/bambus/bambus-2.33-r2.ebuild
index 1e2078c94..475c7f0b1 100644
--- a/sci-biology/bambus/bambus-2.33-r1.ebuild
+++ b/sci-biology/bambus/bambus-2.33-r2.ebuild
@@ -66,11 +66,12 @@ src_prepare() {
einfo "bambus-2.33/src/TIGR_Foundation_CC/OptionResult.cc:/*! Uses same
syntax as getopt"
#rm -rf src/TIGR_Foundation_CC || die "Failed to rm -rf
src/TIGR_Foundation_CC/, we use it from sci-biology/tigr-foundation-libs"
#sed -i 's:TIGR_Foundation_CC::' src/Makefile || die "Failed to zap
last pointer to local copy of tigr-foundation-libs"
- cd src/TIGR_Foundation_CC || die "Failed to cd src/TIGR_Foundation_CC/"
- sed -e "s:/export/usr/local:${ED}/usr:g" -i Makefile || die
}
src_install() {
+ pushd src/TIGR_Foundation_CC || die
+ sed -e "s:/export/usr/local:${ED}/usr:g" -i Makefile || die
+ popd || die
emake DESTDIR="${ED}/usr" install
# cvs HEAD of amos now contains even more updated files:
/usr/bin/printScaff /usr/bin/untangle /usr/lib/TIGR/AsmLib.pm
for f in FASTArecord.pm FASTAreader.pm Foundation.pm FASTAgrammar.pm
AsmLib.pm; do rm "${ED}"/usr/lib/TIGR/$f; done || die
