commit: d5c451e59a806404de4c3a9428a10c04a4f77dfc Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org> AuthorDate: Thu Feb 10 09:16:27 2022 +0000 Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org> CommitDate: Thu Feb 10 09:17:33 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d5c451e5
sci-biology/rmblast: treeclean Closes: https://bugs.gentoo.org/515962 Closes: https://bugs.gentoo.org/579248 Closes: https://bugs.gentoo.org/664518 Closes: https://bugs.gentoo.org/711246 Closes: https://bugs.gentoo.org/716172 Closes: https://bugs.gentoo.org/457972 Closes: https://bugs.gentoo.org/724466 Closes: https://bugs.gentoo.org/828706 Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org> profiles/package.mask | 1 - sci-biology/rmblast/Manifest | 2 -- sci-biology/rmblast/metadata.xml | 8 ------ sci-biology/rmblast/rmblast-1.2-r1.ebuild | 47 ------------------------------- 4 files changed, 58 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 0930db366fbe..61c24ff3f499 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -257,7 +257,6 @@ sci-chemistry/povscript+ # Removal on 2022-02-11. Bug #828706. Bug #828701. sci-biology/repeatmasker sci-biology/repeatmasker-libraries -sci-biology/rmblast # Brian Evans <[email protected]> (2022-01-07) # The main consumer, phpunit, does not initiate the new timer correctly diff --git a/sci-biology/rmblast/Manifest b/sci-biology/rmblast/Manifest deleted file mode 100644 index 383d30fdb026..000000000000 --- a/sci-biology/rmblast/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST rmblast-1.2-gcc47.patch.bz2 7803 BLAKE2B cd3bb1aa2b6eb9e188f28589d42ce91f027866d91013f2a6123ee61e7ce28f980b858e775bc15313cf1573f0bc827f9e663d46c1bd0d2fe218745cfbbc3781a1 SHA512 4cd72dd5c777ad866b9cf674384872de5424404b524ac536e58ab412b98b6601aa5f609d05ea2329b77f16e7aca215bbc6eb3531652e5fe81e48cf997b56d13b -DIST rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz 10744076 BLAKE2B 6539ec8fcd345bcc1c3ecede6acec233cdc343c3df18748e195dc525f4a65fefeee8398471a26dc671bfed8612e010c26b7a8a66a3c7198f142c2e068ff72751 SHA512 e7c2ebd114aee045ea3f3f462cf2658440e13a2d1eb777648386e1c5eeda9f8083af383c019f9b5802d935d6eb2367eef20822afc45233ddb44a426b4dd7ddb6 diff --git a/sci-biology/rmblast/metadata.xml b/sci-biology/rmblast/metadata.xml deleted file mode 100644 index ccdff086e20b..000000000000 --- a/sci-biology/rmblast/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/rmblast/rmblast-1.2-r1.ebuild b/sci-biology/rmblast/rmblast-1.2-r1.ebuild deleted file mode 100644 index 20a68f97763c..000000000000 --- a/sci-biology/rmblast/rmblast-1.2-r1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit epatch flag-o-matic toolchain-funcs - -MY_NCBI_BLAST_V=2.2.23+ - -DESCRIPTION="RepeatMasker compatible version of NCBI BLAST+" -HOMEPAGE="http://www.repeatmasker.org/RMBlast.html"; -SRC_URI="http://www.repeatmasker.org/rmblast-${PV}-ncbi-blast-${MY_NCBI_BLAST_V}-src.tar.gz - https://dev.gentoo.org/~mgorny/dist/${P}-gcc47.patch.bz2"; - -LICENSE="OSL-2.1" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -RDEPEND="dev-libs/boost" -DEPEND="${RDEPEND} - app-arch/cpio" - -S="${WORKDIR}/${P}-ncbi-blast-${MY_NCBI_BLAST_V}-src/c++" - -src_prepare() { - filter-ldflags -Wl,--as-needed - sed \ - -e 's/-print-file-name=libstdc++.a//' \ - -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \ - -e "/DEF_FAST_FLAGS=/s:=\".*\":=\"${CFLAGS}\":g" \ - -e 's/2.95\* | 2.96\* | 3\.\* | 4\.\* )/2.95\* | 2.96\* | \[3-9\]\.\* )/g' \ - -i src/build-system/configure || die - epatch "${WORKDIR}"/${P}-gcc47.patch -} - -src_configure() { - tc-export CXX CC - - "${S}"/configure --without-debug \ - --with-mt \ - --without-static \ - --with-dll \ - --prefix="${ED}"/opt/${PN} \ - --with-boost="${EPREFIX}/usr/include/boost" \ - || die -}
