commit: dd69c779b08abd92b68a520e26ab7bdb9517c3ca Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Sun Feb 13 15:50:19 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Sun Feb 13 15:50:19 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd69c779
sci-biology/mmseqs2: properly respect the cpu flags Upstream PR is here: https://github.com/soedinglab/MMseqs2/pull/533 See also: https://github.com/gentoo/sci/pull/1143 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> .../mmseqs2-13.0-properly-handle-cpuflags.patch | 40 ++++++++++++++++++++++ ...{mmseqs2-13.0.ebuild => mmseqs2-13.0-r1.ebuild} | 4 +++ 2 files changed, 44 insertions(+) diff --git a/sci-biology/mmseqs2/files/mmseqs2-13.0-properly-handle-cpuflags.patch b/sci-biology/mmseqs2/files/mmseqs2-13.0-properly-handle-cpuflags.patch new file mode 100644 index 000000000..10884765c --- /dev/null +++ b/sci-biology/mmseqs2/files/mmseqs2-13.0-properly-handle-cpuflags.patch @@ -0,0 +1,40 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 1a677e3..df1d765 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -56,23 +56,29 @@ if (HAVE_AVX2) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -mavx2 -mcx16 -Wa,-q") + endif () + set(X64 1) +-elseif (HAVE_SSE4_1) ++endif () ++if (HAVE_SSE4_1) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -msse4.1 -mcx16") + set(X64 1) +-elseif (HAVE_SSE2) ++endif () ++if (HAVE_SSE2) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -msse2") + set(DISABLE_IPS4O 1) + set(X64 1) +-elseif (HAVE_POWER9) ++endif () ++if (HAVE_POWER9) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -mcpu=power9 -mvsx") + set(PPC64 1) +-elseif (HAVE_POWER8) ++endif () ++if (HAVE_POWER8) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -mcpu=power8 -mvsx") + set(PPC64 1) +-elseif (HAVE_ARM8) ++endif () ++if (HAVE_ARM8) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -march=armv8-a+simd") + set(ARM 1) +-elseif (HAVE_S390X) ++endif () ++if (HAVE_S390X) + set(MMSEQS_ARCH "${MMSEQS_ARCH} -mzarch -march=z14") + set(ZARCH 1) + endif () diff --git a/sci-biology/mmseqs2/mmseqs2-13.0.ebuild b/sci-biology/mmseqs2/mmseqs2-13.0-r1.ebuild similarity index 95% rename from sci-biology/mmseqs2/mmseqs2-13.0.ebuild rename to sci-biology/mmseqs2/mmseqs2-13.0-r1.ebuild index 5b35f2e5d..6cbd139d8 100644 --- a/sci-biology/mmseqs2/mmseqs2-13.0.ebuild +++ b/sci-biology/mmseqs2/mmseqs2-13.0-r1.ebuild @@ -27,6 +27,10 @@ RDEPEND=" " DEPEND="${RDEPEND}" +PATCHES=( + "${FILESDIR}/${P}-properly-handle-cpuflags.patch" +) + src_configure() { local mycmakeargs=( # Need static libs: https://github.com/soedinglab/MMseqs2/issues/411
