commit: e62617ffb1b60e2a916b7a92659df2606374d62a Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> AuthorDate: Mon Feb 21 16:19:40 2022 +0000 Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> CommitDate: Mon Feb 21 16:20:00 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e62617ff
sci-chemistry/gromacs: Fix musl build (missing int64_t) for 2022 Closes: https://bugs.gentoo.org/833599 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org> .../gromacs/files/gromacs-2022-musl-stdint.patch | 25 ++++++++++++++++++++++ ...22_rc1-r1.ebuild => gromacs-2022_rc1-r2.ebuild} | 2 ++ 2 files changed, 27 insertions(+) diff --git a/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch b/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch new file mode 100644 index 000000000000..cae6fff93ae3 --- /dev/null +++ b/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch @@ -0,0 +1,25 @@ +From 694994a9d8ad989e7c5d61b7759024a7b10ce3b7 Mon Sep 17 00:00:00 2001 +From: Paul Bauer <[email protected]> +Date: Mon, 21 Feb 2022 09:53:46 +0100 +Subject: [PATCH 1/6] Fix missing includes for musl libc + +Fixes #4404 +--- + api/legacy/include/gromacs/math/vectypes.h | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/api/legacy/include/gromacs/math/vectypes.h b/api/legacy/include/gromacs/math/vectypes.h +index b818f5f8f8..7c5457e05d 100644 +--- a/api/legacy/include/gromacs/math/vectypes.h ++++ b/api/legacy/include/gromacs/math/vectypes.h +@@ -36,6 +36,7 @@ + + #include <cassert> + #include <cmath> ++#include <cstdint> + + #include <algorithm> + #include <type_traits> +-- +2.35.1 + diff --git a/sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild b/sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild similarity index 99% rename from sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild rename to sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild index f12ac52a719f..b0d42eda5cb0 100644 --- a/sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild +++ b/sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild @@ -82,6 +82,8 @@ DOCS=( AUTHORS README ) RESTRICT="!test? ( test )" +PATCHES=( "${FILESDIR}/${PN}-2022-musl-stdint.patch" ) + if [[ ${PV} != *9999 ]]; then S="${WORKDIR}/${PN}-${PV/_/-}" fi
