commit: 7b77e6902ea23156a82fa792758968421aae9342
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 19 08:08:44 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 19 08:08:44 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7b77e690
sci-biology/bcftools: drop 1.13, 1.15
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/bcftools/Manifest | 2 --
sci-biology/bcftools/bcftools-1.13.ebuild | 44 -------------------------------
sci-biology/bcftools/bcftools-1.15.ebuild | 44 -------------------------------
3 files changed, 90 deletions(-)
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
index 73403fe6ed42..4dbacdb4a399 100644
--- a/sci-biology/bcftools/Manifest
+++ b/sci-biology/bcftools/Manifest
@@ -1,3 +1 @@
-DIST bcftools-1.13.tar.bz2 6906796 BLAKE2B
4c02d65733d28684f9a976e082913d79dbac4463c9471fc26d8ee0cbe7ad25af429cf7d01b9771bc34309386ccd2d77ebd54fbf64ed4183d1c2ebfbc0e727afb
SHA512
aa533233dd2fec2279859204be39430c4fc630137a91d57fe917fd7a220044d5202ddc3d44bcffc3bd5bd5bb64f6ea4c8ec3c31e5e1ec72399998f1e6f23a55a
DIST bcftools-1.15.1.tar.bz2 6917252 BLAKE2B
d2389df8d2a1bbc48fcaccad47d77ff99d700e82e04330189e7d93acdac97a13506c2b799fbba31bdc0988977c7df7c699e7b156f3530dd35e5f052c6f977731
SHA512
60fedacc41051675d372e68146ac8fa0dc019a7fb694fda487d89e62f34edaf5ac11cca38779e9bcfcf8b3148802fadabed12f7e46ad534ad5087b8d6383f97b
-DIST bcftools-1.15.tar.bz2 6899394 BLAKE2B
44d11f5d594c547c0e3dfdcc9b2d8b55d837d17cf98465c4ce153ad0a8dce3db172276bdd24ad3dcecb3c9a064c649f3cbcc13e09194c2f655796e9a478cb27f
SHA512
43fd7414c93175c6a8d69c8f8ba681a8c1f6b934ce0834dc130ff367825e60aa57736e36d379e5bdee84a01d018ee36eeeedebdbce85161745a5a063abdbca44
diff --git a/sci-biology/bcftools/bcftools-1.13.ebuild
b/sci-biology/bcftools/bcftools-1.13.ebuild
deleted file mode 100644
index b0ddd23857c2..000000000000
--- a/sci-biology/bcftools/bcftools-1.13.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org";
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2";
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- dev-lang/perl
- $(python_gen_cond_dep '
- dev-python/matplotlib[${PYTHON_USEDEP}]
- ')
- =sci-libs/htslib-${PV}*:=
- sys-libs/zlib
- ${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-BDEPEND="${PYTHON_DEPS}"
-
-src_prepare() {
- default
-
- python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --disable-bcftools-plugins \
- --disable-libgsl \
- --with-htslib=system
-}
diff --git a/sci-biology/bcftools/bcftools-1.15.ebuild
b/sci-biology/bcftools/bcftools-1.15.ebuild
deleted file mode 100644
index 4ec6b0a7e097..000000000000
--- a/sci-biology/bcftools/bcftools-1.15.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org";
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2";
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- dev-lang/perl
- $(python_gen_cond_dep '
- dev-python/matplotlib[${PYTHON_USEDEP}]
- ')
- =sci-libs/htslib-${PV}*:=
- sys-libs/zlib
- ${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-BDEPEND="${PYTHON_DEPS}"
-
-src_prepare() {
- default
-
- python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --disable-bcftools-plugins \
- --disable-libgsl \
- --with-htslib=system
-}
