commit: 160424d2088712e79f6d01fc88f745b1312738e4
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Nov 23 08:44:39 2022 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Nov 23 11:26:50 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=160424d2
dev-python/pandas: Bump to 1.5.2
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 1 +
dev-python/pandas/pandas-1.5.2.ebuild | 210 ++++++++++++++++++++++++++++++++++
2 files changed, 211 insertions(+)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index e48fb491fe6a..36dd46c62a78 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,2 +1,3 @@
DIST pandas-1.5.0.tar.gz 5191537 BLAKE2B
c7dec1d0197e6ac860667177f0f255bb327dbd48fe4501280d578b93f4496e61c0847dc478effeb8c5729d7a9d3e8a643c01db095a9843d6d211a9420f94d42c
SHA512
8d340da1e0dff9b64c8993359b35ddcfc796fa15fee1bf1a27ea5a12e33f8b20d45bfac0ff9275b16ff0d4f7855a73962629e06c62bc08ca5e21b4ef1ea29ec2
DIST pandas-1.5.1.tar.gz 5199286 BLAKE2B
17d98870f3397d7a9289a18708021a614b1d456e2ea99dae8927727aabb8aab73bd31f25c3035947f8f4c38404e7d971bf999500b300307b19a2cf6029763d0e
SHA512
e5f25f21f17f36c6488f14fbfa391beb9f1989652de01cb8346d2826dead9331fea27295ee1e6f42d0875f2f1a91fcd23d606edd339432589bca5ba8d89e5ecd
+DIST pandas-1.5.2.tar.gz 5201551 BLAKE2B
c6a8156a6c116f1b576837882e4ad4ada6cf21bf72acd673d74bdb1dda4f97f88a5e6422e8f8ad2fbbb85a334cd68cb0abae316d5826c54a85baf8b325ab6183
SHA512
1e6b653ff418c839895946123f90fffcfafd57f24dfbd6bae4e9988893b7d57d6276ed101112c8f9730af53f600d006fe3a53bbed597c0376856f2cfc90c1f05
diff --git a/dev-python/pandas/pandas-1.5.2.ebuild
b/dev-python/pandas/pandas-1.5.2.ebuild
new file mode 100644
index 000000000000..9b507e23b10b
--- /dev/null
+++ b/dev-python/pandas/pandas-1.5.2.ebuild
@@ -0,0 +1,210 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..11} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 multiprocessing optfeature virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="
+ https://pandas.pydata.org/
+ https://github.com/pandas-dev/pandas/
+ https://pypi.org/project/pandas/
+"
+SRC_URI="
+
https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
+"
+S=${WORKDIR}/${P/_/}
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
+IUSE="doc full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+ >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
+ >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports
python3_11
+# https://github.com/statsmodels/statsmodels/issues/8287
+OPTIONAL_DEPEND="
+ dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+ dev-python/blosc[${PYTHON_USEDEP}]
+ || (
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ )
+ dev-python/jinja[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ || (
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ )
+ >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+ >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
+ >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
+ >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
+ >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
+ !hppa? (
+ $(python_gen_cond_dep '
+ dev-python/statsmodels[${PYTHON_USEDEP}]
+ ' python3_{8..10} )
+ >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
+ )
+ X? (
+ || (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+ )
+"
+COMMON_DEPEND="
+ >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
+ >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
+ >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
+"
+DEPEND="
+ ${COMMON_DEPEND}
+ >=dev-python/cython-0.29.32[${PYTHON_USEDEP}]
+ doc? (
+ ${VIRTUALX_DEPEND}
+ app-text/pandoc
+ dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/ipython[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/nbsphinx[${PYTHON_USEDEP}]
+ >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
+ >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+ >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+ dev-python/rpy[${PYTHON_USEDEP}]
+ dev-python/sphinx[${PYTHON_USEDEP}]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ )
+ test? (
+ ${VIRTUALX_DEPEND}
+ ${RECOMMENDED_DEPEND}
+ ${OPTIONAL_DEPEND}
+ dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+ >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pymysql[${PYTHON_USEDEP}]
+ >=dev-python/pytest-6[${PYTHON_USEDEP}]
+ >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
+ dev-python/psycopg:2[${PYTHON_USEDEP}]
+ dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+"
+# dev-python/statsmodels invokes a circular dep
+# hence rm from doc? ( ), again
+RDEPEND="
+ ${COMMON_DEPEND}
+ !minimal? ( ${RECOMMENDED_DEPEND} )
+ full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+python_prepare_all() {
+ # Prevent un-needed download during build
+ sed -e "/^ 'sphinx.ext.intersphinx',/d" \
+ -i doc/source/conf.py || die
+
+ # requires package installed
+ sed -e '/extra_compile_args =/s:"-Werror"::' \
+ -i setup.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ distutils-r1_python_compile -j1
+}
+
+python_compile_all() {
+ # To build docs the need be located in $BUILD_DIR,
+ # else PYTHONPATH points to unusable modules.
+ if use doc; then
+ cd "${BUILD_DIR}"/lib || die
+ cp -ar "${S}"/doc . && cd doc || die
+ LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
+ fi
+}
+
+src_test() {
+ virtx distutils-r1_src_test
+}
+
+python_test() {
+ local EPYTEST_DESELECT=(
+ # test for rounding errors, fails if we have better precision
+ # e.g. on amd64 with FMA or on arm64
+ # https://github.com/pandas-dev/pandas/issues/38921
+
pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+ # TODO
+
pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
+
pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
+
pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
+
+ # TODO: xdist?
+
pandas/tests/test_expressions.py::TestExpressions::test_run_binary
+
+ # TODO: these require a running db server
+ pandas/tests/io/test_sql.py::TestMySQLAlchemy
+ pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
+ pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
+ pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
+
+ # OOMs
+
pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
+ )
+
+ local -x LC_ALL=C.UTF-8
+ cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+ "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+ epytest pandas --skip-slow --skip-network -m "not single" \
+ -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
+}
+
+python_install_all() {
+ if use doc; then
+ dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+ einfo "An initial build of docs is absent of references to
statsmodels"
+ einfo "due to circular dependency. To have them included,
emerge"
+ einfo "statsmodels next and re-emerge pandas with USE doc"
+ fi
+
+ distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+ optfeature "accelerating certain types of NaN evaluations, using
specialized cython routines to achieve large speedups." dev-python/bottleneck
+ optfeature "accelerating certain numerical operations, using multiple
cores as well as smart chunking and caching to achieve large speedups"
">=dev-python/numexpr-2.1"
+ optfeature "needed for pandas.io.html.read_html"
dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
+ optfeature "for msgpack compression using blosc" dev-python/blosc
+ optfeature "Template engine for conditional HTML formatting"
dev-python/jinja
+ optfeature "Plotting support" dev-python/matplotlib
+ optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0"
dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+ optfeature "necessary for HDF5-based storage"
">=dev-python/pytables-3.2.1"
+ optfeature "R I/O support" dev-python/rpy
+ optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+ optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
+ optfeature "miscellaneous statistical functions" dev-python/scipy
+ optfeature "necessary to use pandas.io.clipboard.read_clipboard
support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}
