commit: 701845a53aaac429eca917f44a0de89e5a7b4024
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Jan 13 08:53:00 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Jan 13 08:53:00 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=701845a5
sci-biology/deeptools: add 3.5.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/deeptools/deeptools-3.5.1.ebuild | 36 ++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/sci-biology/deeptools/deeptools-3.5.1.ebuild
b/sci-biology/deeptools/deeptools-3.5.1.ebuild
new file mode 100644
index 000000000..5dbf6dc55
--- /dev/null
+++ b/sci-biology/deeptools/deeptools-3.5.1.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+
+inherit distutils-r1
+
+DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert
BAM to bigWig"
+HOMEPAGE="https://github.com/deeptools/deepTools";
+SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz ->
${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+# TODO: fix this
+RESTRICT="test"
+
+RDEPEND="
+ >=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
+ >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}]
+ >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}]
+ dev-python/plotly[${PYTHON_USEDEP}]
+ >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}]
+ >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}]
+ >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}]
+ >=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}]
+"
+
+S="${WORKDIR}/deepTools-${PV}"
+
+distutils_enable_sphinx docs dev-python/sphinx_rtd_theme
dev-python/sphinx-argparse
+distutils_enable_tests nose
