commit: 5921ae942a5c831957c1d975278befd4d8cb5e28
Author: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Sun Feb 19 05:26:31 2023 +0000
Commit: Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Sun Feb 19 05:26:31 2023 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=5921ae94
sci-biology/cmdock: drop 0.1.4-r2
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>
sci-biology/cmdock/Manifest | 1 -
sci-biology/cmdock/cmdock-0.1.4-r2.ebuild | 109 ------------------------------
2 files changed, 110 deletions(-)
diff --git a/sci-biology/cmdock/Manifest b/sci-biology/cmdock/Manifest
index 8757cee0d..708adb269 100644
--- a/sci-biology/cmdock/Manifest
+++ b/sci-biology/cmdock/Manifest
@@ -1,2 +1 @@
-DIST cmdock-v0.1.4.tar.bz2 14095825 BLAKE2B
80d5d86dc11e842689255d2b673545436404fb92815bb33b5ff15eba0cd3e8970a750dfeb657d018ef31024a2ecf591bcb5c6c1f427be1d0c86a0cfc017c8aa0
SHA512
d0d9a96ef0fad8cd4b320a2339a1889e481a825c5712259e04c9e91b34de597def3100c3c9f71fa63f3eef43892a17c0114d4cc93e99424bcdcc1fc97c25f51e
DIST cmdock-v0.2.0.tar.bz2 14155812 BLAKE2B
daf2f1ac137761bf24b2295dd025e81b29eefae23b5b33c7319f87cf6ea938bcb2ce619229d84dd2af9f31785b63bab4dda95bba3e7cd4de122f94f953913694
SHA512
67eda7e712650641219d7d4d4f9c455923bc6241aa687c5b3f489e251b9e838c3bcdcc7184540ab28f96ab8f573320599669e4b52989ce33a015bceec89717c5
diff --git a/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild
b/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild
deleted file mode 100644
index 3338c03ac..000000000
--- a/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild
+++ /dev/null
@@ -1,109 +0,0 @@
-# Copyright 2021-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..11} )
-BOINC_APP_OPTIONAL="true"
-DOCS_BUILDER="sphinx"
-DOCS_AUTODOC=0
-inherit python-single-r1 boinc-app docs flag-o-matic meson optfeature
-
-DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock";
-SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2";
-S="${WORKDIR}/${PN}-v${PV}"
-INSTALL_PREFIX="${EPREFIX}/opt/${P}"
-
-LICENSE="LGPL-3 ZLIB"
-SLOT="0/${PV}"
-KEYWORDS="~amd64"
-IUSE="apidoc boinc cpu_flags_x86_sse2"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- ${PYTHON_DEPS}
- dev-lang/perl:*
- boinc? ( sci-misc/boinc-wrapper )
-"
-DEPEND="
- dev-cpp/eigen:3
- dev-cpp/indicators
- >=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
- dev-libs/cxxopts
-"
-BDEPEND="
- apidoc? (
- app-doc/doxygen
- dev-texlive/texlive-fontutils
- )
-"
-
-PATCHES=( "${FILESDIR}"/cmdock-0.1.4-fix-detection.patch )
-
-DOCS=( INSTALL.md README.md )
-
-BOINC_MASTER_URL="https://www.sidock.si/sidock/";
-BOINC_INVITATION_CODE="Crunch_4Science"
-BOINC_APP_HELPTEXT=\
-"The easiest way to do something useful with this application
-is to attach it to SiDock@home BOINC project."
-
-foreach_wrapper_job() {
- sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die
-}
-
-src_prepare() {
- default
- python_fix_shebang "${S}"/bin
-}
-
-src_configure() {
- # very weird directory layout
- local emesonargs=(
- --prefix="${EPREFIX}/opt/${P}"
- )
- meson_src_configure
-
- use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE"
-}
-
-src_compile() {
- meson_src_compile
-
- if use doc; then
- DOCS_DIR="docs"
- sphinx_compile
- fi
-
- if use apidoc; then
- DOCS_BUILDER="doxygen"
- DOCS_DIR="docs"
- doxygen_compile
- fi
-}
-
-src_install() {
- meson_src_install
- python_optimize "${ED}"/opt/${P}/
-
- if use boinc; then
- doappinfo "${FILESDIR}"/app_info_${PV}.xml
- dowrapper ${PN}-boinc-zcp
-
- # install a blank file
- touch "${T}"/docking_out || die
- insinto $(get_project_root)
- insopts -m 0644 --owner root --group boinc
- doins "${T}"/docking_out
- fi
-}
-
-pkg_postinst() {
- optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy
sci-chemistry/openbabel[python]"
- use boinc && boinc-app_pkg_postinst
-}
-
-pkg_postrm() {
- use boinc && boinc-app_pkg_postrm
-}
