commit: be2f4981d032c159c47549e819b668772b468566 Author: mschubert <mschu.dev <AT> gmail <DOT> com> AuthorDate: Sat Dec 20 20:00:02 2014 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Dec 20 20:00:02 2014 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=be2f4981
add metadata.xml --- sci-biology/biobambam/metadata.xml | 15 +++++++++++++++ sci-libs/libmaus/metadata.xml | 14 ++++++++++++++ 2 files changed, 29 insertions(+) diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml new file mode 100644 index 0000000..9dab650 --- /dev/null +++ b/sci-biology/biobambam/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> +<herd>sci-biology</herd> +<longdescription lang="en"> +This package contains some tools for processing BAM files including + +bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name +bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field +bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column +bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. +bamsort: reads BAM and writes BAM resorted by coordinates or query name +bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name +</longdescription> +</pkgmetadata> diff --git a/sci-libs/libmaus/metadata.xml b/sci-libs/libmaus/metadata.xml new file mode 100644 index 0000000..3d92636 --- /dev/null +++ b/sci-libs/libmaus/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> +<herd>sci-libs</herd> +<longdescription lang="en"> +libmaus is a collection of data structures and algorithms. It contains + +I/O classes (single byte and UTF-8) + bitio classes (input, output and various forms of bit level manipulation) + text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) + BAM sequence alignment files input/output (simple and collating) + and many lower level support classes. +</longdescription> +</pkgmetadata>
