commit: 2a18d4692818d5745073530283176f88b955b27f Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue May 2 12:10:47 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue May 2 12:15:17 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a18d469
sci-biology/pysamstats: treeclean Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/pysamstats/metadata.xml | 16 -------------- sci-biology/pysamstats/pysamstats-1.1.2.ebuild | 30 -------------------------- 2 files changed, 46 deletions(-) diff --git a/sci-biology/pysamstats/metadata.xml b/sci-biology/pysamstats/metadata.xml deleted file mode 100644 index cc923c1df..000000000 --- a/sci-biology/pysamstats/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">alimanfoo/pysamstats</remote-id> - <remote-id type="pypi">pysamstats</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/pysamstats/pysamstats-1.1.2.ebuild b/sci-biology/pysamstats/pysamstats-1.1.2.ebuild deleted file mode 100644 index 445ec2162..000000000 --- a/sci-biology/pysamstats/pysamstats-1.1.2.ebuild +++ /dev/null @@ -1,30 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8,9} ) - -inherit distutils-r1 - -DESCRIPTION="Calculate stats against genome positions from SAM/BAM/CRAM file" -HOMEPAGE="https://github.com/alimanfoo/pysamstats - https://pypi.python.org/pypi/pysamstats"; -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -# TODO: fix this -# ModuleNotFoundError: No module named 'pysamstats.opt' -# happens even with the --install option -RESTRICT="test" - -BDEPEND="dev-python/cython[${PYTHON_USEDEP}]" -RDEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - sci-biology/pysam[${PYTHON_USEDEP}] -" - -distutils_enable_tests pytest
