commit:     3e103d61fbead2f6cfc07fed707633100c60a0fc
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May  2 12:36:00 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May  2 12:36:00 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3e103d61

licenses: cleanup old licenses

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 licenses/CeCILL-1.1 | 513 ----------------------------------------------------
 licenses/PGI        | 262 ---------------------------
 licenses/ligplot+   | 138 --------------
 licenses/polyphen   |   7 -
 licenses/signalp    | 218 ----------------------
 licenses/tmhmm      | 217 ----------------------
 6 files changed, 1355 deletions(-)

diff --git a/licenses/CeCILL-1.1 b/licenses/CeCILL-1.1
deleted file mode 100644
index b4efe1181..000000000
--- a/licenses/CeCILL-1.1
+++ /dev/null
@@ -1,513 +0,0 @@
-                FREE SOFTWARE LICENSING AGREEMENT CeCILL
-                ========================================
-
-
-Notice
-------
-
-
-This Agreement is a free software license that is the result of  discussions
-between its authors  in  order  to  ensure  compliance  with  the  two  main
-principles guiding its drafting:
-   - firstly, its conformity with French law, both as  regards  the  law  of
-     torts and intellectual property law, and the protection that it offers
-     to authors and the holders of economic rights over software.
-   - secondly, compliance with the principles for the distribution  of  free
-     software: access to source codes, extended user-rights.
-
-The following bodies are the authors of this license CeCILL (Ce : CEA, C :
-CNRS, I : INRIA, LL : Logiciel Libre):
-
-Commissariat � l'Energie Atomique - CEA, a public scientific, technical  and
-industrial establishment, having its principal place of  business  at  31-33
-rue de la F�d�ration, 75752 PARIS cedex 15, France.
-
-Centre National de la Recherche Scientifique -  CNRS,  a  public  scientific
-and technological establishment, having its principal place of  business  at
-3 rue Michel-Ange 75794 Paris cedex 16, France.
-
-Institut National de Recherche en Informatique et en Automatique - INRIA,  a
-public scientific and  technological  establishment,  having  its  principal
-place of business at Domaine de Voluceau, Rocquencourt,  BP  105,  78153  Le
-Chesnay cedex.
-
-
-PREAMBLE
---------
-
-
-The purpose of this Free Software Licensing Agreement is to grant users  the
-right to modify and redistribute  the  software  governed  by  this  license
-within the framework of an "open source" distribution model.
-
-The exercising of these rights is conditional upon certain  obligations  for
-users  so  as  to  ensure  that  this  status  is  retained  for  subsequent
-redistribution operations.
-
-As a counterpart to the access to the source code and rights to copy, modify
-and redistribute granted by the license,  users are provided only with  a
-limited warranty and  the software's author, the holder of the economic
-rights,  and  the  successive licensors only have limited liability.
-
-In this respect, it is brought to the user's attention that the risks
-associated  with loading, using, modifying and/or developing or reproducing
-the  software  by the user given its nature of Free Software,  that  may  
-mean that it is complicated to manipulate, and that also therefore means 
-that it is reserved for developers and experienced professionals having
-in-depth computer knowledge. Users are therefore encouraged to load and test
-the Software's suitability  as  regards  their  requirements  in  conditions
-enabling  the security of their systems and/or data to be ensured and, more
-generally,  to use and operate  it  in  the  same  conditions  of security.
-This Agreement may be  freely  reproduced  and  published, provided  it  is
-not altered, and that no Articles are either added or removed herefrom. 
-
-This Agreement may apply to any or all software for which the holder of  the
-economic rights decides to submit the operation thereof to its provisions.
-
-
-Article 1  - DEFINITIONS
-------------------------
-
-
-For the purposes of this Agreement, when the following expressions  commence
-with a capital letter, they shall have the following meaning:
-
-Agreement: means this Licensing Agreement, and any or all of its  subsequent
-versions.
-
-Software: means the software in its Object  Code  and/or  Source  Code  form
-and, where applicable, its documentation, "as  is"  at  the  time  when  the
-Licensee accepts the Agreement.
-
-Initial Software: means the Software in its Source Code and/or  Object  Code
-form and, where applicable, its documentation, "as is" at the time  when  it
-is distributed for the first time under the  terms  and  conditions  of  the
-Agreement.
-
-Modified  Software:  means  the  Software   modified   by   at   least   one
-Contribution.
-
-Source Code: means all the Software's  instructions  and  program  lines  to
-which access is required so as to modify the Software.
-
-Object Code: means the binary files originating from the compilation of  the
-Source Code.
-
-Holder: means  the  holder  of  the  economic  rights  over  the  Initial
-Software.
-
-Licensee(s): mean(s) the Software user(s) having accepted the Agreement.
-
-Contributor: means a Licensee having made at least one Contribution.
-
-Licensor: means the Holder, or any or all other individual or legal  entity,
-that distributes the Software under the Agreement.
-
-Contributions: mean any or  all  modifications,  corrections,  translations,
-adaptations and/or new functionalities integrated into the Software  by  any
-or all Contributor, and the Static Modules.
-
-Module: means a set of sources files  including  their  documentation  that,
-once compiled in executable form, enables supplementary  functionalities  or
-services to be developed in addition to those offered by the Software.
-
-Dynamic Module: means any or all module, created by  the  Contributor,  that
-is independent of the Software, so that this module and the Software are  in
-two different executable forms that are  run  in  separate  address  spaces,
-with one calling the other when they are run.
-
-Static Module: means any or all  module,  created  by  the  Contributor  and
-connected to the Software by a static link that  makes  their  object  codes
-interdependent. This module and the Software to which it is  connected,  are
-combined in a single executable.
-
-Parties: mean both the Licensee and the Licensor.
-
-These expressions may be used both in singular and plural form.
-
-
-Article 2 - PURPOSE
--------------------
-
-
-The purpose of the  Agreement  is  to  enable  the  Licensor  to  grant  the
-Licensee a free, non-exclusive, transferable and worldwide License  for  the
-Software as set forth in  Article  5  hereinafter  for  the  whole  term  of
-protection of the rights over said Software.
-
-
-Article 3 - ACCEPTANCE
-----------------------
-
-
-3.1. The  Licensee  shall  be  deemed  as  having  accepted  the  terms  and
-conditions of  this  Agreement  by  the  occurrence  of  the  first  of  the
-following events:
-- (i) loading the Software by any or all means, notably,  by  downloading
-  from a remote server, or by loading from a physical medium;
-- (ii) the first time the Licensee exercises any of  the  rights  granted
-  hereunder.
-
-3.2. One copy  of  the  Agreement,  containing  a  notice  relating  to  the
-specific nature of the  Software,  to  the  limited  warranty,  and  to  the
-limitation to use by experienced users has been  provided  to  the  Licensee
-prior to its acceptance as set forth in Article  3.1  hereinabove,  and  the
-Licensee hereby acknowledges that it is aware thereof.
-
-
-Article 4 - EFFECTIVE DATE AND TERM
------------------------------------
-
-
-4.1. EFFECTIVE DATE
-
-The Agreement shall become effective on the date when it is accepted by  the
-Licensee as set forth in Article 3.1.
-
-4.2. TERM
-
-The Agreement  shall  remain  in  force  during  the  whole  legal  term  of
-protection of the economic rights over the Software.
-
-
-Article 5 - SCOPE OF THE RIGHTS GRANTED
----------------------------------------
-
-
-The  Licensor  hereby  grants  to  the  Licensee,  that  accepts  such,  the
-following rights as regards the Software for any or all  use,  and  for  the
-term of the Agreement, on the basis of the terms and  conditions  set  forth
-hereinafter.
-
-Otherwise, the Licensor grants to the Licensee free of  charge  exploitation
-rights on  the  patents  he  holds  on  whole  or  part  of  the  inventions
-implemented in the Software.
-
-5.1. RIGHTS OF USE
-
-The Licensee is authorized to use the Software, unrestrictedly,  as  regards
-the fields of application, with it being  hereinafter  specified  that  this
-relates to:
-- permanent or temporary reproduction of all or part of the Software  by
-  any or all means and in any or all form.
-- loading, displaying, running, or storing the Software on any or all
-  medium.
-- entitlement to observe, study or test the operation thereof so  as  to
-  establish the ideas and principles that form the basis for any or  all
-  constituent elements of said  Software.  This  shall  apply  when  the
-  Licensee  carries  out  any  or  all  loading,  displaying,   running,
-  transmission or storage operation as regards the Software, that it  is
-  entitled to carry out hereunder.
-
-5.2. entitlement to make CONTRIBUTIONS
-
-The right to make Contributions includes  the  right  to  translate,  adapt,
-arrange, or make any or all modification to the Software, and the  right  to
-reproduce the resulting Software.
-
-The Licensee is authorized to make any or all Contribution to  the  Software
-provided that it  explicitly  mentions  its  name  as  the  author  of  said
-Contribution and the date of the development thereof.
-
-5.3. DISTRIBUTION AND PUBLICATION RIGHTS
-
-In particular, the right of distribution and publication includes the  right
-to transmit and communicate the Software to the general  public  on  any  or
-all medium, and by any or all means, and the  right  to  market,  either  in
-consideration of a fee, or free of charge, a  copy or copies of the Software 
-by means of any or all process.
-The Licensee is further authorized to redistribute copies  of  the  modified
-or  unmodified  Software  to  third  parties  according  to  the  terms  and
-conditions set forth hereinafter.
-
-5.3.1. REDISTRIBUTION OF SOFTWARE WITHOUT MODIFICATION
-
-The Licensee is authorized to redistribute true copies of  the  Software  in
-Source Code or Object Code form, provided that said redistribution  complies
-with all the provisions of the Agreement and is accompanied by:
-- a copy of the Agreement,
-- a notice relating to the limitation of both  the  Licensor's  warranty
-  and liability as set forth in Articles 8 and 9,
-and  that,  in  the  event  that  only  the  Software's   Object   Code   is
-redistributed, the Licensee allows future  Licensees  unhindered  access  to
-the Software's full Source  Code  by  providing  them  with  the  terms  and
-conditions for access thereto, it being understood that the additional  cost
-of acquiring the Source Code shall not exceed the cost of  transferring  the
-data.
-
-5.3.2. REDISTRIBUTION OF MODIFIED  SOFTWARE
-
-When the Licensee makes a  Contribution  to  the  Software,  the  terms  and
-conditions for the redistribution of the Modified  Software  shall  then  be
-subject to all the provisions hereof.
-
-The Licensee is authorized to redistribute the Modified Software, in  Source
-Code or Object Code form, provided that said  redistribution  complies  with
-all the provisions of the Agreement and is accompanied by:
-- a copy of the Agreement,
-- a notice relating to the limitation of both  the  Licensor's  warranty
-  and liability as set forth in Articles 8 and 9,
-and that, in the event that only the  Modified  Software's  Object  Code  is
-redistributed, the Licensee allows future  Licensees  unhindered  access  to
-the Modified Software's full Source Code by providing them  with  the  terms
-and conditions for access thereto, it being understood that  the  additional
-cost of acquiring the Source Code shall not exceed the cost of  transferring
-the data.
-
-
-5.3.3. redistribution OF DYNAMIC MODULES
-
-When the Licensee has developed a Dynamic Module, the terms  and  conditions
-hereof do not apply to said Dynamic Module, that  may  be  distributed under 
-a separate Licensing Agreement.
-
-5.3.4. COMPATIBILITY WITH THE GPL LICENSE
-
-In the event that the Modified or unmodified Software is included in a code
-that is subject to the provisions of the GPL License, the Licensee is
-authorized to redistribute the whole under the GPL License.
-
-In the event that the Modified Software includes a code that is  subject  to
-the  provisions  of  the  GPL  License,  the  Licensee  is   authorized   to
-redistribute the Modified Software under the GPL License.
-
-
-Article 6  - INTELLECTUAL PROPERTY
-----------------------------------
-
-
-6.1. OVER THE INITIAL SOFTWARE
-
-The Holder owns the economic rights over the Initial Software.  Any  or  all
-use of the Initial Software is subject to  compliance  with  the  terms  and
-conditions under which the Holder has elected to distribute its work and  no
-one shall be entitled to  and it shall have sole entitlement to  modify  the
-terms and conditions for the distribution of said Initial Software.
-
-The Holder undertakes to maintain the distribution of the  Initial  Software
-under the conditions of  the  Agreement,  for  the  duration  set  forth  in
-article 4.2..
-
-6.2. OVER THE CONTRIBUTIONS
-
-The intellectual property rights over the Contributions belong to  the
-holder of the economic rights as designated by effective legislation.
-
-6.3. OVER THE DYNAMIC MODULES
-
-The Licensee having  developed  a  Dynamic  Module  is  the  holder  of  the
-intellectual property rights over said Dynamic Module and is free to  choose
-the agreement that shall govern its distribution.
-
-6.4. JOINT PROVISIONS
-
-6.4.1. The Licensee expressly undertakes:
-- not to remove, or modify, in  any  or  all  manner,  the  intellectual
-  property notices affixed to the Software;
-- to reproduce said notices, in an identical manner, in  the  copies  of
-  the Software.
-
-6.4.2. The Licensee undertakes not to directly or  indirectly  infringe  the
-intellectual property rights of the Holder and/or Contributors and to  take,
-where applicable, vis-�-vis its staff,  any  or  all  measures  required  to
-ensure respect for said intellectual property rights of  the  Holder  and/or
-Contributors.
-
-
-Article 7  - RELATED SERVICES
------------------------------
-
-
-7.1. Under no circumstances shall  the  Agreement  oblige  the  Licensor  to
-provide technical assistance or maintenance services for the Software.
-
-However, the Licensor is entitled to offer  this  type  of  service. The
-terms  and  conditions  of  such  technical  assistance,  and/or   such 
-maintenance, shall then be set forth in  a  separate  instrument.  Only  the
-Licensor offering said  maintenance  and/or  technical  assistance  services
-shall incur liability therefor.
-
-7.2. Similarly, any or all Licensor  shall  be  entitled  to  offer  to  its
-Licensees, under its own responsibility, a  warranty,  that  shall  only  be
-binding upon itself, for the  redistribution  of  the  Software  and/or  the
-Modified Software, under terms and conditions  that  it  shall  decide  upon
-itself. Said warranty,  and  the  financial  terms  and  conditions  of  its
-application, shall be subject to a separate instrument executed between  the
-Licensor and the Licensee.
-
-
-Article 8  - LIABILITY
-----------------------
-
-
-8.1. Subject to the provisions of Article 8.2, should the Licensor  fail  to
-fulfill all or part of its obligations  hereunder,  the  Licensee  shall  be
-entitled to claim compensation for the direct loss suffered  as a result of
-a fault on the part of the Licensor, subject to providing evidence of it. 
-
-8.2. The Licensor's liability is limited to the commitments made under  this
-Licensing Agreement and shall not be incurred as a result ,  in  particular:
-(i) of loss due the Licensee's total  or  partial  failure  to  fulfill  its
-obligations, (ii) direct or consequential loss due to the Software's use  or
-performance that  is  suffered  by  the  Licensee,  when  the  latter  is  a
-professional  using  said  Software  for  professional  purposes  and  (iii)
-consequential loss due to the Software's use  or  performance.  The  Parties
-expressly agree that any or all pecuniary or business  loss  (i.e.  loss  of
-data, loss  of  profits,  operating  loss,  loss  of  customers  or  orders,
-opportunity cost, any disturbance to business  activities)  or  any  or  all
-legal proceedings instituted against the Licensee by a  third  party,  shall
-constitute consequential loss and shall not provide entitlement  to  any  or
-all compensation from the Licensor.
-
-
-Article 9  - WARRANTY
----------------------
-
-
-9.1. The  Licensee  acknowledges  that  the  current  situation  as  regards
-scientific and  technical  know-how  at  the  time  when  the  Software  was
-distributed did not enable all possible uses to be tested and verified,  nor
-for the presence of any or all faults to be detected. In this  respect,  the
-Licensee's attention has been drawn to the risks  associated  with  loading,
-using, modifying and/or developing and reproducing  the  Software  that  are
-reserved for experienced users.
-
-The Licensee shall be responsible for verifying, by any or  all  means,  the
-product's suitability for its requirements, its due and proper  functioning,
-and for ensuring that it  shall  not  cause  damage  to  either  persons  or
-property.
-
-9.2. The Licensor hereby represents, in good faith, that it is  entitled  to
-grant all the rights on the  Software (including in  particular  the  rights
-set forth in Article 5 hereof over the Software).
-
-9.3. The Licensee acknowledges that the Software is supplied "as is" by  the
-Licensor without any or all other express  or  tacit  warranty,  other  than
-that provided for in Article 9.2 and, in  particular,  without  any  or  all
-warranty as to its market  value,  its  secured,  innovative  or  relevant
-nature.
-
-Specifically, the Licensor does not warrant that the Software is  free  from
-any or all error, that it shall  operate  continuously,  that  it  shall  be
-compatible  with   the   Licensee's   own   equipment   and   its   software
-configuration, nor that it shall meet the Licensee's requirements.
-
-9.4. The Licensor does not either expressly  or  tacitly  warrant  that  the
-Software does not  infringe  any  or  all  third  party  intellectual  right
-relating to a patent, software or  to  any  or  all  other  property  right.
-Moreover, the Licensor shall not hold the Licensee harmless against  any  or
-all proceedings for infringement that may be instituted in  respect  of  the
-use, modification and redistribution of the Software.  Nevertheless,  should
-such proceedings be instituted against  the  Licensee,  the  Licensor  shall
-provide it with  technical  and  legal  assistance  for  its  defense.  Such
-technical and legal assistance shall  be  decided  upon  on  a  case-by-case
-basis  between  the  relevant  Licensor  and  the  Licensee  pursuant  to  a
-memorandum of understanding. The Licensor disclaims any or all liability  as
-regards the Licensee's use of the Software's  name.  No  warranty  shall  be
-provided as regards the existence of prior  rights  over  the  name  of  the
-Software and as regards the existence of a trademark.
-
-
-Article 10  - TERMINATION
--------------------------
-
-
-10.1. In  the  event  of  a  breach  by  the  Licensee  of  its  obligations
-hereunder, the Licensor may automatically terminate  this  Agreement  thirty
-(30) days after notice has been  sent  to  the  Licensee  and  has  remained
-ineffective.
-
-10.2. The  Licensee  whose  Agreement  is  terminated  shall  no  longer  be
-authorized to use, modify or distribute the Software. However,  any  or  all
-licenses that it may have granted prior to  termination  of  the  Agreement
-shall remain valid subject to their having been granted in  compliance  with
-the terms and conditions hereof.
-
-
-Article 11  - MISCELLANEOUS PROVISIONS
---------------------------------------
-
-
-11.1. EXCUSABLE EVENTS
-
-Neither Party shall be liable for any or all delay, or  failure  to  perform
-the Agreement, that may be attributable to an event  of  force  majeure,  an
-act of God or an outside cause, such as, notably, defective functioning,  or
-interruptions affecting  the  electricity  or  telecommunications  networks,
-blocking of the network following a virus attack, the  intervention  of  the
-government authorities, natural disasters, water damage, earthquakes,  fire,
-explosions, strikes and labor unrest, war, etc.
-
-11.2. The fact that either Party may fail, on one or several  occasions,  to
-invoke  one  or  several  of  the  provisions   hereof,   shall   under   no
-circumstances be interpreted as being a waiver by the  interested  Party  of
-its entitlement to invoke said provision(s) subsequently.
-
-11.3. The Agreement cancels and replaces  any  or  all  previous  agreement,
-whether written or oral, between the Parties and having  the  same  purpose,
-and  constitutes  the  entirety  of  the  agreement  between  said   Parties
-concerning said purpose. No supplement or  modification  to  the  terms  and
-conditions hereof shall be effective as regards the  Parties  unless  it  is
-made in writing and signed by their duly authorized representatives.
-
-11.4. In the event that one or several of  the  provisions  hereof  were  to
-conflict with a current or future applicable act or legislative  text,  said
-act or legislative text shall take precedence, and the  Parties  shall  make
-the necessary amendments so  as  to  be  in  compliance  with  said  act  or
-legislative  text.  All  the  other  provisions  shall   remain   effective.
-Similarly, the fact that a provision of  the  Agreement  may   be  null  and
-void, for any reason whatsoever, shall not cause the Agreement  as  a  whole
-to be null and void.
-
-11.5. LANGUAGE
-
-The Agreement is drafted in both French and  English.  In  the  event  of  a
-conflict as  regards  construction,  the  French  version  shall  be  deemed
-authentic.
-
-
-Article 12  - NEW VERSIONS OF THE AGREEMENT
--------------------------------------------
-
-
-12.1. Any or all person is authorized to duplicate and distribute copies  of
-this Agreement.
-
-12.2. So as to ensure coherence, the wording of this Agreement is  protected
-and may only be modified by the authors of the  License,  that  reserve  the
-right to periodically publish updates or  new  versions  of  the  Agreement,
-each with a separate number. These subsequent versions may address new issues
-encountered by Free Software.
-
-12.3. Any  or  all  Software  distributed  under  a  given  version  of  the
-Agreement may only be subsequently distributed under  the  same  version  of
-the Agreement, or  a  subsequent  version,  subject  to  the  provisions  of
-article 5.3.4.
-
-
-Article 13 - GOVERNING LAW AND JURISDICTION
--------------------------------------------
-
-
-13.1. The Agreement is  governed  by  French  law.   The  Parties  agree  to
-endeavor to settle the disagreements or disputes that may arise  during  the
-performance of the Agreement out-of-court.
-
-13.2. In the absence of an out-of-court settlement within two (2) months  as
-from their occurrence, and unless emergency proceedings are  necessary,  the
-disagreements or disputes shall be  referred  to  the  Paris  Courts  having
-jurisdiction, by the first Party to take action.
-
-
-                                                   Version 1.1 of 10/26/2004
-
-
-
-
-
-
-
-
-
-
-

diff --git a/licenses/PGI b/licenses/PGI
deleted file mode 100644
index a54f86c9b..000000000
--- a/licenses/PGI
+++ /dev/null
@@ -1,262 +0,0 @@
-PGI End-User License Agreement
-
-NOTICE: PLEASE READ THIS DOCUMENT CAREFULLY BEFORE DOWNLOADING, COPYING OR
-USING THE LICENSED SOFTWARE.  THIS END-USER LICENSE AGREEMENT ("ELA") IS A
-LEGAL AGREEMENT BETWEEN YOU, THE LICENSEE (A SINGLE PERSON, INSTITUTION, OR
-LEGAL ENTITY) ("YOU"), AND STMICROELECTRONICS, N.V., A DUTCH CORPORATION,
-HAVING ITS PRINCIPAL PLACE OF BUSINESS AT STRAWINSKYLAAN 1725, TOWER B 17TH
-FLOOR, 1077 XX AMSTERDAM, THE NETHERLANDS, ACTING FOR THE PURPOSE OF THIS
-ELA THROUGH ITS SWISS BRANCH, 39, CHEMIN DU CHAMP DES FILLES, C. P. 21, CH
-1228 PLAN-LES-OUATES, GENEVA, SWITZERLAND ("ST") FOR THE LICENSED SOFTWARE,
-ASSOCIATED MEDIA, PRINTED MATERIAL, ELECTRONIC DOCUMENTATION OR ANY PORTION
-THEREOF ("SOFTWARE").  ST IS WILLING TO LICENSE THE SOFTWARE TO YOU ONLY
-UPON THE CONDITION THAT YOU ACCEPT ALL OF THE TERMS CONTAINED IN THIS ELA.
-PLEASE READ THE ELA CAREFULLY.  BY DOWNLOADING OR INSTALLING THIS SOFTWARE,
-YOU ACCEPT ALL OF THE TERMS OF THE ELA. PLEASE INDICATE YOUR ACCEPTANCE OF
-ALL OF THE THESE TERMS BY SELECTING THE "ACCEPT" BUTTON AT THE BOTTOM OF
-THE ELA. IF YOU ARE UNWILLING TO BE BOUND BY ALL OF THE TERMS, PLEASE
-SELECT THE "DECLINE" BUTTON AT THE BOTTOM OF THE ELA AND THE DOWNLOAD OR
-INSTALL PROCESS WILL STOP.
-
-
-1)     Ownership
-
-       The Software distributed and licensed to You hereunder, including, if
-       and when provided, any updates furnished to You for free or for
-       additional fees, is proprietary to ST or its licensors (ST and
-       licensors hereafter referred to as "Licensor").  The Licensors retain
-       title to and ownership of the Software, including the copy provided
-       herein, and reserve all rights not expressly granted in this ELA.
-
-2)     Granting of License
-
-2A)    Except as set forth in Sections 3 and 4 below, under the terms and
-       conditions of this ELA, You are hereby granted a limited, revocable,
-       nontransferable, and nonexclusive license to use the Software subject
-       to the restrictions and other terms within.  That use must be
-       (i)     only by You,
-       (ii)    only on a computer system running a specific operating system
-               on which the Software is designed to run and for which portions
-               of the Software and subsequent components in the compilation
-               process are intended to produce an executable image ("Target
-               Systems") for which the corresponding fee has been paid,
-       (iii)   only on the network(s) and only by the number of users for
-               which the corresponding fee has been paid, and
-       (iv)    only to target no more than the maximum number of CPUs, or
-               the maximum number of processes, for which the corresponding
-               fee has been paid.
-       Except as set forth in Section 2B below, any other use of the
-       Software is strictly prohibited.
-
-2B)    You may distribute an end-user application that You build with the
-       Software that provides significant functionality distinct from that
-       included with the Software ("End-User Application") to users within
-       Your organization as well as third party users outside Your
-       organization ("Sublicensees") for only such uses and/or Target
-       Systems for which the Software was designed and intended.  You agree
-       that any sublicense shall not relieve You from Your obligations under
-       this ELA.  The Software includes the run-time files, libraries and
-       executables ("Run-Time Files") that are bound into Your application
-       by the linker or otherwise required by Your application.  You may
-       also distribute separate dynamically-linked or executable Run-Time
-       Files required during the execution of Your End-User Application.
-       Whenever an End-User Application is used internally within Your
-       organization or by outside third parties, You shall contractually
-       require that all Sublicensees abide by the following restrictions:
-       (i)     they shall not use the "PGI", "The Portland Group", "ST", or
-               "STMicroelectronics" name, logo, or trademarks in marketing the
-               End-User Application without prior written permission from ST,
-       (ii)    they will maintain a valid copyright on the End-User
-               Application,
-       (iii)   they will, without limitation, indemnify, hold harmless, and
-               defend ST and other applicable Licensors and their respective
-               affiliates and suppliers from and against any and all claims,
-               lawsuits, costs, and expenses, including attorney's fees, that
-               arise or result from their use or distribution of the End-User
-               Application, and
-       (iv)    they shall strictly prohibit the further distribution of the
-               Run-Time Files by the user of the End-User Application.
-       Notwithstanding the above, the only Run-Time Files that may be
-       distributed as noted in this Section 2B are in the folders or
-       directories whose names begin with "REDIST".
-
-3)     Software from Microsoft
-       
-       You acknowledge that as part of the Software You may receive Run-Time
-       Files in the form of Microsoft Foundation Classes ("MFCs"), Active
-       Template Libraries ("ATLs"), and/or "C" Runtime files ("CRTs") in
-       binary form only ("Microsoft Distributable Code").  Notwithstanding
-       any other provision of this ELA, You acknowledge and agree
-       (A)     that You have a limited right to use the Microsoft
-               Distributable Code to design,   develop, or test for use with 
the
-               Software only,
-       (B)     that You or Your end-users of the Microsoft Distributable Code
-               may only use it to create programs that run natively on
-               Microsoft platforms, and
-       (C)     to the following restrictions: You and Your end-users:
-               (i)   will not alter any copyright, trademark, patent, or other
-                     legal notice or disclaimer in the Microsoft Distributable
-                     Code,
-               (ii)  will not run the Microsoft Distributable Code on a
-                     platform other than a Microsoft platform, and
-               (iii) will not include Microsoft Distributable Code in
-                     malicious, deceptive, or unlawful programs.
-       Further, You will require end   users of the Microsoft Distributable
-       Code to agree to terms at least as protective as this ELA.
-
-4)     Software from Sun Microsystems and/or Oracle America, Inc.
-
-       You acknowledge that as part of the Software you are receiving access
-       to Java(tm) 2 Runtime Environment (J2RE), version 1.4.2 or subsequent
-       versions ("Java Code").  Notwithstanding any other provision of this
-       ELA, You are hereby granted a limited, revocable, nontransferable,
-       and nonexclusive license, without the right to sublicense, to use the
-       Java Code complete and unmodified for the sole purpose of running
-       Java applets and applications intended to run on the JavaTM 2
-       Platform Standard Edition 5.0 (J2SE 5.0) or subsequent versions on
-       Java-enabled general purpose desktop computers and servers.
-
-5)     Restrictions
-      
-5A)    You may make one (1) copy of the Software in machine-readable form,
-       solely for archival or backup purposes, provided the copyright notice
-       and other proprietary legends on the Software are included on any
-       archival/backup copies.  You may not modify, adapt, translate,
-       reverse engineer, de-compile, disassemble, or create derivative
-       works, in whole or in part, based on the Software.  You may not rent,
-       lease, loan, share, or electronically transfer the Software to
-       others.
-
-5B)    The term "proprietary" as used in this ELA or in the Software does
-       not establish a confidential relationship between the Licensor and
-       You and does not in itself provide You any rights to the Software.
-       You acknowledge that the  Licensors have valuable intellectual
-       property rights in the Software and agree to respect and protect such
-       intellectual property rights.  No right, title, or interest in or to
-       any trademark, service mark, logo or trade name of the Licensors is
-       granted under this ELA.
-
-5C)    You acknowledge and agree that the Software is not designed or
-       intended for use in nuclear activities or life support systems.  The
-       Licensors disclaim any express or implied warranty of fitness for
-       such uses.
-      
-5D)    You will not modify or distribute any of the Software so that any
-       part of it becomes subject to an Excluded License.  As used in this
-       ELA, an "Excluded License" is one that requires, as a condition of
-       use, modification, or distribution, that
-       (i)     the Software be disclosed or distributed in source code form; or
-       (ii)    others have a right to modify it, or
-       (iii)   the Software loses its proprietary nature.
-       Therefore, without the prior written permission of the applicable
-       Licensors, You may not modify the Software directly in any way.  In
-       particular, You may not introduce or commingle with the Software any
-       source or object code that is governed by an open source or public
-       license of any kind.
-
-6)     Limited Warranty  
-
-       THE SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND.  TO
-       THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, THE LICENSORS FURTHER
-       DISCLAIM ALL WARRANTIES, INCLUDING WITHOUT LIMITATION ANY IMPLIED
-       WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND
-       NONINFRINGEMENT.  THE ENTIRE RISK ARISING OUT OF THE USE OR
-       PERFORMANCE OF THE SOFTWARE AND DOCUMENTATION REMAINS WITH YOU. TO
-       THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW,  IN NO EVENT SHALL
-       THE LICENSORS BE LIABLE FOR ANY CONSEQUENTIAL, INCIDENTAL, INDIRECT,
-       SPECIAL, PUNITIVE, OR OTHER DAMAGES WHATSOEVER (INCLUDING, WITHOUT
-       LIMITATION, DAMAGES FOR LOSS OF BUSINESS PROFITS, BUSINESS
-       INTERRUPTION, LOSS OF BUSINESS INFORMATION, LOSS OF DATA OR OTHER
-       PECUNIARY LOSS) ARISING OUT OF THIS ELA OR THE USE OF OR INABILITY TO
-       USE THE SOFTWARE, EVEN IF THE LICENSORS HAVE BEEN ADVISED OF THE
-       POSSIBILITY OF SUCH DAMAGES. NOTWITHSTANDING THE FOREGOING, TO THE
-       EXTENT THAT ST MAY BE HELD LEGALLY LIABLE TO YOU BY A COURT OF
-       COMPETENT JURISDICTION UNDER CONTRACT, TORT, OR ANY OTHER LEGAL
-       THEORY, THE MAXIMUM LIABILITY OF THE LICENSORS SHALL NOT EXCEED THE
-       APPLICABLE PURCHASE PRICE OF THE SOFTWARE OR ONE THOUSAND DOLLARS
-       ($1,000), WHICHEVER IS GREATER.
-
-7)     Indemnity and Audit
-
-7A)    You agree to indemnify, defend, and hold the Licensors harmless from
-       and against any and all claims, liabilities, damages, penalties,
-       settlements, and costs and expenses (including, without limitation,
-       reasonable attorneys' fees and court or arbitration costs), asserted
-       by any and all third parties (collectively "Claims") against the
-       Licensors, and their respective employees, directors, officers, and
-       agents alleging or resulting from:
-       (i)     Your breach of any term or condition of this ELA;
-       (ii)    alleged or actual infringement of the intellectual property or
-               other proprietary rights of a third party by You or Your
-               sublicensees; unauthorized alteration of the Software or
-               derivative products by You or Your sublicensees;
-       (iii)   combination of the Software or derivative products with other
-               software, products or materials not in accordance with the
-               terms   of this ELA; or
-       (iv)    any acts or omissions by You, Your employees, directors,
-               officers, and agents or sublicensees either under this ELA or
-               outside its scope, including personal injury, death, or
-               property damage to anyone or anything.
-
-7B)    ST reserves the right, upon reasonable prior written notice to You
-       and during Your normal business hours, to audit Your use of the
-       Software and any derivative products made therefrom to confirm Your
-       compliance with the terms of this ELA.
-
-8)     Software Export
-
-       All Software and technical data delivered under this ELA are subject
-       to US export control laws and may be subject to export or import
-       regulations in other countries.  You agree to comply strictly with
-       all such laws and regulations and acknowledge that You have the
-       responsibility to obtain such licenses to export, re-export, or
-       import as may be required after delivery to You.
-
-9)     Software Manuals
-
-       All proprietary documentation provided with the Software is copyrighted
-       and may not be copied, photographed, reproduced, translated or reduced
-       to any electronic medium or machine-readable form in whole or in part
-       without the express, written, prior approval of ST.
-
-10)    Government Use 
-
-       The Software is a "commercial item," as that term is defined at 48
-       C.F.R. 2.101 (OCT 1995), consisting of "commercial computer software"
-       and "commercial computer software documentation," as such terms are
-       used in 48 C.F.R. 12.212 (SEPT 1995) and is provided to the U.S.
-       Government only as a commercial end item.  Consistent with 48 C.F.R.
-       12.212 and 48 C.F.R. 227.7202-1 through 227.7202-4 (JUNE 1995), all
-       U.S. Government licensees and end users acquire the Software with
-       only those rights set forth herein. 
-
-11)    Termination  
-
-       The license granted to You in this ELA is effective until terminated.
-       The license may be terminated by ST at any time without prior notice.
-       You may terminate the license at any time by returning and/or
-       destroying the Software together with all copies.  Upon termination
-       of the license for any reason, you agree to destroy all copies of the
-       Software.
-      
-12)    Surviving Terms
-
-       In the event this ELA is terminated for any reason, the following
-       provisions shall survive termination and shall remain in full force
-       and effect: 1, 5, 6, 7, 8, 9, 10, 12, and 13.
-
-13)    Controlling Law and Complete Agreement  
-
-       This Agreement shall be construed and interpreted under the laws of
-       the state of New York, not including its conflict of laws principles.
-       If any provision of this ELA, or portion thereof, is found to be
-       unenforceable, that provision shall be enforced to the maximum extent
-       possible and the remainder of this ELA shall continue in full force
-       and effect.
-
-YOU ACKNOWLEDGE THAT YOU HAVE READ THIS ELA AND AGREE TO BE BOUND BY ITS
-TERMS.  YOU FURTHER AGREE THAT IT IS THE COMPLETE AND EXCLUSIVE STATEMENT
-OF AGREEMENT BETWEEN YOU AND ST AND THAT IT SUPERSEDES ANY PRIOR AGREEMENT,
-ORAL OR WRITTEN, ANY PROPOSAL, AND ANY OTHER COMMUNICATIONS BETWEEN YOU AND
-ST RELATING TO THE SUBJECT MATTER OF THIS ELA.
-

diff --git a/licenses/ligplot+ b/licenses/ligplot+
deleted file mode 100644
index 7457f6622..000000000
--- a/licenses/ligplot+
+++ /dev/null
@@ -1,138 +0,0 @@
-LIGPLOT - Automated representation of protein-ligand interactions
-  ----------------------------------------------------------------
-
-                       CONFIDENTIALITY AGREEMENT
-                       -------------------------
-
-
-
-In regard to the LIGPLOT , specified in the Appendix herewith 
-(the Software) supplied to us, the copyright and other
-intellectual property rights to which belong to the authors, we
-
-
-    __________________________________________________________________
-
-undertake to the authors that we shall be bound by the following terms 
-and conditions:-
-
-1. We will receive the Software and any related documentation in 
-confidence and will not use the same except for the purpose of the
-department's own research. The Software will be used only by such of 
-our officers or employees to whom it must reasonably be communicated 
-to enable us to undertake our research and who agree to be bound by 
-the same confidence.  The department shall procure and enforce such
-agreement from its staff for the benefit of the authors.
-
-2. The publication of research using the Software must reference
-"Wallace A C, Laskowski R A, Thornton J M (1995). LIGPLOT: A program
-to generate schematic diagrams of protein-ligand interactions. Protein 
-Engineering, 8, 127-134."
-
-3. Research shall take place solely at the department's premises at
-
-
-    __________________________________________________________________
-
-4. All forms of the Software will be kept in a reasonably secure place
- to prevent unauthorised access.
-
-5. Each copy of the Software or, if not practicable then, any package
-associated therewith shall be suitably marked (and such marking 
-maintained) with the following copyright notice: " Copyright 1994
-A C Wallace, R A Laskowski, & J M Thornton All Rights Reserved".
-
-6. The Software may be modified but any changes made shall be made
-available to the authors.
-
-7. The Software shall be used exclusively for academic teaching and
-research. The Software will not be used for any commercial research or
-research associated with an industrial company.
-
-8. The confidentiality obligation in paragraph one shall not apply:
-
-   (i)  to information and data known to the department at the time of
-       receipt hereunder (as evidenced by its written records);
-
-  (ii) to information and data which was at the time of receipt in the 
-       public domain or thereafter becomes so through no wrongful act of
-       the department;
-
- (iii) to information and data which the department receives from a third
-       party not in breach of any obligation of confidentiality owed to
-       the authors.
-
-Please sign this Undertaking and return a copy of it to indicate that you 
-have read, understood and accepted the above terms.
-
-
-
-                     For and on behalf of _____________________________
-
-                     _________________________________________________
-                    
-                     ..................................................
-
-                     Dated ............................................
-
-
-
-e-mail address ___________________________
-
-
-
-Please complete the above form, sign it, and then send it, or fax it, to:-
-
-
-Roman Laskowski
-European Bioinformatics Institute,
-Wellcome Trust Genome Campus,
-Hinxton,
-Cambridge, CB10 1SD,
-United Kingdom
- 
-Fax:- +44 (0)1223 494 468
- 
[email protected]
-
-
-If you have any problems either installing the software or running it,
-please e-mail your problems to:-
-
-     [email protected]
-
-
-APPENDIX - Files supplied as part of the LIGPLOT program
---------------------------------------------------------
-
-Source program files:-
-1. ligplot.c
-2. ligplot.h
-3. hbadd.c
-4. hbadd.h
-5. dimer.c
-6. dimer.h
-
-Script files:-
-1. ligplot.scr
-2. ligonly.scr
-3. dimplot.scr
-4. dimonly.scr
-
-Parameter file:-
-1. ligplot.prm
-
-Installation instructions:-
-1. install.doc
-
-Documentation:-
-1. manual.tar.Z
-2. README
-
-Confidentiality Agreement:-
-1. confid.txt
-
-
-
-                                                   v.4.4.2 - 7 Mar 2003
-

diff --git a/licenses/polyphen b/licenses/polyphen
deleted file mode 100644
index 250b86ed7..000000000
--- a/licenses/polyphen
+++ /dev/null
@@ -1,7 +0,0 @@
-The software provided herein is free for academic instruction and research
-use only. Commercial licenses are available to legal entities, including
-companies and organizations (both for-profit and non-profit), requiring the
-software for general commercial use. To obtain a commercial license please,
-contact us via e-mail.
-
-e-mail: [email protected]
\ No newline at end of file

diff --git a/licenses/signalp b/licenses/signalp
deleted file mode 100644
index 7e5b15f19..000000000
--- a/licenses/signalp
+++ /dev/null
@@ -1,218 +0,0 @@
-  ACADEMIC SOFTWARE LICENSE AGREEMENT FOR END-USERS AT PUBLICLY FUNDED
-  ACADEMIC, EDUCATION OR RESEARCH INSTITUTIONS FOR THE USE OF SignalP 3.0
-  
-  By downloading the Software you are consenting to be bound by and become
-  a party to this agreement as the "Licensee". If you do not agree to all
-  of the terms of this agreement, you must not click the Acceptance
-  button, not install the product nor use the product, and you do not
-  become a LICENSEE under this agreement. 
-  
-  If you are not a member of a publicly funded Academic and/or Education
-  and/or Research Institution you must obtain a commercial license, please
-  send mail to ([email protected]). This software license agreement is
-  entered into by and between Center for Biological Sequence Analysis,
-  Technical University of Denmark (hereinafter "CBS") and the "LICENSEE". 
-  
-  WHEREAS CBS has the right to license all copyrights and other property
-  rights in the Licensed Software identified as SignalP 3.0 and developed
-  by CBS and CBS desires to license the Software so that it becomes
-  available for public use and benefit. 
-  
-  WHEREAS LICENSEE is a public funded Academic and/or Education and/or
-  Research Institution. 
-  
-  WHEREAS LICENSEE desires to acquire a free non-exclusive license to use
-  the Software for internal research purposes only. 
-  
-  NOW, THEREFORE, in consideration of the mutual promises and covenants
-  contained herein, the parties agree as follows: 
-  
-  1. Definitions 
-  
-  "Licensed Software" means the specific version SignalP 3.0 pursuant
-  to this Agreement. Any opinion, findings, conclusions or recommendations
-  expressed in the Licensed Software are those of the authors and do not
-  necessarily reflect the views of CBS. 
-  
-  2. License 
-  
-  Subject to the terms and conditions of this Agreement a non-exclusive,
-  non-transferable License to use and copy the Licensed Software is made
-  available free of charge for the LICENSEE which is a non-profit
-  educational, academic and/or research institution. The License is only
-  granted for personal and internal use in research only at one Site,
-  where a Site is defined as a set of contiguous buildings in one
-  location. The software will be used at only one location of LICENSEE. 
-  
-  This license does not entitle Licensee to receive from CBS copies of the
-  Licensed software on disks, tapes or CD's, hard-copy documentation,
-  technical support, telephone assistance, or enhancements or updates to
-  the Licensed Software. 
-  
-  The user and any research assistants, co-workers or other workers who
-  may use the Software agree to not give the program to third parties or
-  grant licenses on software, which include the Software, alone or
-  integrated into other software, to third parties. Modification of the
-  source code is prohibited without the prior written consent of CBS. 
-  
-  3. Ownership 
-  
-  Except as expressly licensed in this Agreement, CBS shall retain title
-  to the Licensed Software, and any upgrades and modifications created by
-  CBS. 
-  
-  4. Consideration 
-  
-  In consideration for the license rights granted by CBS, LICENSEE will
-  obtain this academic license free of charge. 
-  
-  5. Copies 
-  
-  LICENSEE shall have the right to make copies of the Licensed Software
-  for internal use at the Site and for back-up purposes under this
-  Agreement, but agrees that all such copies shall contain the copyright
-  notices and all other reasonable and appropriate proprietary markings or
-  confidential legends that appear on the Licensed Software provided
-  hereunder. 
-  
-  6. Support 
-  
-  CBS shall have no obligation to offer support services to LICENSEE, and
-  nothing contained herein shall be interpreted as to require CBS to
-  provide maintenance, installation services, version updates, debugging,
-  consultation or end-user support of any kind. 
-  
-  7. Software Protection 
-  
-  LICENSEE acknowledges that the Licensed Software is proprietary to CBS.
-  The software code shall be treated as trade secrets and confidential
-  information of CBS, and LICENSEE agrees to use best efforts to hold the
-  same in confidence. LICENSEE's obligation for confidentiality shall not
-  extend to any information which is or becomes generally available to the
-  public, is already known to or subsequently disclosed by third parties
-  to LICENSEE and at its free disposal, or is independently developed by
-  LICENSEE or its affiliates without the use of the confidential
-  information disclosed by CBS, or is required by law or legal process. 
-  
-  Except as other wise expressly permitted in this Agreement, Licensee my
-  not (i) modify or create any derivative works of the Licensed Software
-  or documentation, including customization, translation or localization;
-  (ii) decompile, disassemble, reverse engineer, or otherwise attempt to
-  derive the source code for the Product; (iii) redistribute, encumber,
-  sell, rent, lease, sublicense, or otherwise transfer rights to the
-  Licensed Software; (iv) remove or alter any trademark, logo, copyright
-  or other proprietary notices, legends, symbols or labels in the Product;
-  or (v) publish any results of benchmark tests run on the Product to a
-  third party without CBS's prior written consent. 
-  
-  8. Representations of CBS to LICENSEE 
-  
-  CBS represents to LICENSEE that (i) CBS has the right to grant the
-  License and to enter into this agreement, (ii) that, to the best of
-  CBS's knowledge, the Licensed software does not infringe any patent,
-  copyright or trade secrets of any third party, provided however that
-  such representation and warranty shall not apply to any addition to, or
-  modifications or adaptation of, the Licensed Software made by LICENSEE
-  and (iii) CBS undertakes to use best efforts to cooperate with and
-  assist LICENSEE, at LICENSEE's expense, in defending itself against any
-  action based on the alleged infringement of any third party patent,
-  copyright or trade secret rights resulting from or relating to the use
-  or licensing of the Licensed Software by LICENSEE. 
-  
-  9. Indemnity and Disclaimer of Warranties 
-  
-  Except as expressly set forth in this agreement, CBS makes no
-  representations or warranties, express or implied. 
-  
-  The product is provided free of charge, and, therefore, on an "as is"
-  basis, without warranty of any kind, express or implied, including
-  without limitation the warranties that it is free of defects, virus
-  free, able to operate on an uninterrupted basis, merchantable, fit for a
-  particular purpose or non-interfering. The entire risk as to the quality
-  and performance of the Licensed Software is borne by LICENSEE. 
-  
-  By way of example, but not limitation, CBS makes no representations or
-  warranties of merchantability or fitness for any particular application
-  or, except as set forth in paragraph 8, that the use of the Software
-  will not infringe any patents, copyrights or trademarks or other rights
-  of third parties. The entire risk as to the quality and performance of
-  the product is borne by LICENSEE. CBS shall not be liable for any
-  liability or damages with respect to any claim by LICENSEE or any third
-  party on account of, or arising from the license or use of the Software.
-  
-  Should the Licensed Software prove defective in any respect, LICENSEE
-  and not LICENSOR or it's affiliates should assume the entire cost of any
-  service and repair. This disclaimer of warranty constitutes an essential
-  part of this agreement. No use of the licensed product is authorized
-  hereunder except under this disclaimer. 
-  
-  In no event will LICENSOR or its affiliates be liable for any indirect,
-  special, incidental or consequential damages arising out of the use of
-  or inability to use the product, including, without limitation, damages
-  for lost profits, loss of goodwill, work stoppage, computer failure or
-  malfunction, or any and all other commercial damages or losses, even if
-  advised of the possibility thereof, and regardless of the legal or
-  equitable theory (contract, tort or otherwise) upon which the claim is
-  based. 
-  
-  10. Promotional Advertising & References 
-  
-  LICENSEE may not use the name of the Licensed Software in its
-  promotional advertising, product literature, and other similar
-  promotional materials to be disseminated to the public or any portion
-  thereof. LICENSEE agrees not to identify CBS in any promotional
-  advertising or other promotional materials to be disseminated to the
-  public, or any portion thereof without CBS's prior written consent.
-  LICENSEE agrees that any reference to the software for crystallographic
-  computations will cite one or more publications as set forth in the
-  manual and in agreement with common scientific practice. CBS shall not
-  use LICENSEE's name in publicity or advertising involving this Agreement
-  or otherwise without LICENSEE's prior written consent which may be
-  withheld at LICENSEE's sole discretion. 
-  
-  11. Term 
-  
-  This Agreement and the license rights granted herein shall become
-  effective as of the date this Agreement is executed by both parties and
-  shall be perpetual unless terminated in accordance with this Section. 
-  
-  CBS may terminate this Agreement at any time. 
-  
-  Either party may terminate this Agreement at any time effective upon the
-  other party's breach of any agreement, covenant, or representation made
-  in this Agreement, such breach remaining uncorrected sixty (60) days
-  after written notice thereof. 
-  
-  LICENSEE shall have the right, at any time, to terminate this Agreement
-  without cause by written notice to CBS specifying the date of
-  termination. 
-  
-  Upon termination, LICENSEE shall destroy all full and partial copies of
-  the Licensed Software. 
-  
-  12. Governing Law 
-  
-  This Agreement shall be construed in accordance with the laws of
-  Denmark. 
-  
-  13. General 
-  
-  The parties agree that this Agreement is the complete and exclusive
-  agreement among the parties and supersedes all proposals and prior
-  agreements whether written or oral, and all other communications among
-  the parties relating to the subject matter of this Agreement. This
-  Agreement cannot be modified except in writing and signed by both
-  parties. Failure by either party at any time to enforce any of the
-  provisions of this Agreement shall not constitute a waiver by such party
-  of such provision nor in any way affect the validity of this Agreement. 
-  
-  The invalidity of singular provisions does not affect the validity of
-  the entire understanding. The parties are obligated, however, to replace
-  the invalid provisions by a regulation which comes closest to the
-  economic intent of the invalid provision. The same shall apply mutatis
-  mutandis in case of a gap. 
-  
-  IN WITNESS WHEREOF, the LICENSEE hereto have caused this Agreement to be
-  duly executed on the date of the download of the software and by
-  accepting the license conditions by pressing the Acceptance button. 
-  

diff --git a/licenses/tmhmm b/licenses/tmhmm
deleted file mode 100644
index 529d135d5..000000000
--- a/licenses/tmhmm
+++ /dev/null
@@ -1,217 +0,0 @@
-  ACADEMIC SOFTWARE LICENSE AGREEMENT FOR END-USERS AT PUBLICLY FUNDED
-  ACADEMIC, EDUCATION OR RESEARCH INSTITUTIONS FOR THE USE OF TMHMM 2.0c
-  
-  By downloading the Software you are consenting to be bound by and become
-  a party to this agreement as the "Licensee". If you do not agree to all
-  of the terms of this agreement, you must not click the Acceptance
-  button, not install the product nor use the product, and you do not
-  become a LICENSEE under this agreement. 
-  
-  If you are not a member of a publicly funded Academic and/or Education
-  and/or Research Institution you must obtain a commercial license, please
-  send mail to ([email protected]). This software license agreement is
-  entered into by and between Center for Biological Sequence Analysis,
-  Technical University of Denmark (hereinafter "CBS") and the "LICENSEE". 
-  
-  WHEREAS CBS has the right to license all copyrights and other property
-  rights in the Licensed Software identified as TMHMM 2.0c and developed
-  by CBS and CBS desires to license the Software so that it becomes
-  available for public use and benefit. 
-  
-  WHEREAS LICENSEE is a public funded Academic and/or Education and/or
-  Research Institution. 
-  
-  WHEREAS LICENSEE desires to acquire a free non-exclusive license to use
-  the Software for internal research purposes only. 
-  
-  NOW, THEREFORE, in consideration of the mutual promises and covenants
-  contained herein, the parties agree as follows: 
-  
-  1. Definitions 
-  
-  "Licensed Software" means the specific version TMHMM 2.0c pursuant
-  to this Agreement. Any opinion, findings, conclusions or recommendations
-  expressed in the Licensed Software are those of the authors and do not
-  necessarily reflect the views of CBS. 
-  
-  2. License 
-  
-  Subject to the terms and conditions of this Agreement a non-exclusive,
-  non-transferable License to use and copy the Licensed Software is made
-  available free of charge for the LICENSEE which is a non-profit
-  educational, academic and/or research institution. The License is only
-  granted for personal and internal use in research only at one Site,
-  where a Site is defined as a set of contiguous buildings in one
-  location. The software will be used at only one location of LICENSEE. 
-  
-  This license does not entitle Licensee to receive from CBS copies of the
-  Licensed software on disks, tapes or CD's, hard-copy documentation,
-  technical support, telephone assistance, or enhancements or updates to
-  the Licensed Software. 
-  
-  The user and any research assistants, co-workers or other workers who
-  may use the Software agree to not give the program to third parties or
-  grant licenses on software, which include the Software, alone or
-  integrated into other software, to third parties. Modification of the
-  source code is prohibited without the prior written consent of CBS. 
-  
-  3. Ownership 
-  
-  Except as expressly licensed in this Agreement, CBS shall retain title
-  to the Licensed Software, and any upgrades and modifications created by
-  CBS. 
-  
-  4. Consideration 
-  
-  In consideration for the license rights granted by CBS, LICENSEE will
-  obtain this academic license free of charge. 
-  
-  5. Copies 
-  
-  LICENSEE shall have the right to make copies of the Licensed Software
-  for internal use at the Site and for back-up purposes under this
-  Agreement, but agrees that all such copies shall contain the copyright
-  notices and all other reasonable and appropriate proprietary markings or
-  confidential legends that appear on the Licensed Software provided
-  hereunder. 
-  
-  6. Support 
-  
-  CBS shall have no obligation to offer support services to LICENSEE, and
-  nothing contained herein shall be interpreted as to require CBS to
-  provide maintenance, installation services, version updates, debugging,
-  consultation or end-user support of any kind. 
-  
-  7. Software Protection 
-  
-  LICENSEE acknowledges that the Licensed Software is proprietary to CBS.
-  The software code shall be treated as trade secrets and confidential
-  information of CBS, and LICENSEE agrees to use best efforts to hold the
-  same in confidence. LICENSEE's obligation for confidentiality shall not
-  extend to any information which is or becomes generally available to the
-  public, is already known to or subsequently disclosed by third parties
-  to LICENSEE and at its free disposal, or is independently developed by
-  LICENSEE or its affiliates without the use of the confidential
-  information disclosed by CBS, or is required by law or legal process. 
-  
-  Except as other wise expressly permitted in this Agreement, Licensee my
-  not (i) modify or create any derivative works of the Licensed Software
-  or documentation, including customization, translation or localization;
-  (ii) decompile, disassemble, reverse engineer, or otherwise attempt to
-  derive the source code for the Product; (iii) redistribute, encumber,
-  sell, rent, lease, sublicense, or otherwise transfer rights to the
-  Licensed Software; (iv) remove or alter any trademark, logo, copyright
-  or other proprietary notices, legends, symbols or labels in the Product;
-  or (v) publish any results of benchmark tests run on the Product to a
-  third party without CBS's prior written consent. 
-  
-  8. Representations of CBS to LICENSEE 
-  
-  CBS represents to LICENSEE that (i) CBS has the right to grant the
-  License and to enter into this agreement, (ii) that, to the best of
-  CBS's knowledge, the Licensed software does not infringe any patent,
-  copyright or trade secrets of any third party, provided however that
-  such representation and warranty shall not apply to any addition to, or
-  modifications or adaptation of, the Licensed Software made by LICENSEE
-  and (iii) CBS undertakes to use best efforts to cooperate with and
-  assist LICENSEE, at LICENSEE's expense, in defending itself against any
-  action based on the alleged infringement of any third party patent,
-  copyright or trade secret rights resulting from or relating to the use
-  or licensing of the Licensed Software by LICENSEE. 
-  
-  9. Indemnity and Disclaimer of Warranties 
-  
-  Except as expressly set forth in this agreement, CBS makes no
-  representations or warranties, express or implied. 
-  
-  The product is provided free of charge, and, therefore, on an "as is"
-  basis, without warranty of any kind, express or implied, including
-  without limitation the warranties that it is free of defects, virus
-  free, able to operate on an uninterrupted basis, merchantable, fit for a
-  particular purpose or non-interfering. The entire risk as to the quality
-  and performance of the Licensed Software is borne by LICENSEE. 
-  
-  By way of example, but not limitation, CBS makes no representations or
-  warranties of merchantability or fitness for any particular application
-  or, except as set forth in paragraph 8, that the use of the Software
-  will not infringe any patents, copyrights or trademarks or other rights
-  of third parties. The entire risk as to the quality and performance of
-  the product is borne by LICENSEE. CBS shall not be liable for any
-  liability or damages with respect to any claim by LICENSEE or any third
-  party on account of, or arising from the license or use of the Software.
-  
-  Should the Licensed Software prove defective in any respect, LICENSEE
-  and not LICENSOR or it's affiliates should assume the entire cost of any
-  service and repair. This disclaimer of warranty constitutes an essential
-  part of this agreement. No use of the licensed product is authorized
-  hereunder except under this disclaimer. 
-  
-  In no event will LICENSOR or its affiliates be liable for any indirect,
-  special, incidental or consequential damages arising out of the use of
-  or inability to use the product, including, without limitation, damages
-  for lost profits, loss of goodwill, work stoppage, computer failure or
-  malfunction, or any and all other commercial damages or losses, even if
-  advised of the possibility thereof, and regardless of the legal or
-  equitable theory (contract, tort or otherwise) upon which the claim is
-  based. 
-  
-  10. Promotional Advertising & References 
-  
-  LICENSEE may not use the name of the Licensed Software in its
-  promotional advertising, product literature, and other similar
-  promotional materials to be disseminated to the public or any portion
-  thereof. LICENSEE agrees not to identify CBS in any promotional
-  advertising or other promotional materials to be disseminated to the
-  public, or any portion thereof without CBS's prior written consent.
-  LICENSEE agrees that any reference to the software for crystallographic
-  computations will cite one or more publications as set forth in the
-  manual and in agreement with common scientific practice. CBS shall not
-  use LICENSEE's name in publicity or advertising involving this Agreement
-  or otherwise without LICENSEE's prior written consent which may be
-  withheld at LICENSEE's sole discretion. 
-  
-  11. Term 
-  
-  This Agreement and the license rights granted herein shall become
-  effective as of the date this Agreement is executed by both parties and
-  shall be perpetual unless terminated in accordance with this Section. 
-  
-  CBS may terminate this Agreement at any time. 
-  
-  Either party may terminate this Agreement at any time effective upon the
-  other party's breach of any agreement, covenant, or representation made
-  in this Agreement, such breach remaining uncorrected sixty (60) days
-  after written notice thereof. 
-  
-  LICENSEE shall have the right, at any time, to terminate this Agreement
-  without cause by written notice to CBS specifying the date of
-  termination. 
-  
-  Upon termination, LICENSEE shall destroy all full and partial copies of
-  the Licensed Software. 
-  
-  12. Governing Law 
-  
-  This Agreement shall be construed in accordance with the laws of
-  Denmark. 
-  
-  13. General 
-  
-  The parties agree that this Agreement is the complete and exclusive
-  agreement among the parties and supersedes all proposals and prior
-  agreements whether written or oral, and all other communications among
-  the parties relating to the subject matter of this Agreement. This
-  Agreement cannot be modified except in writing and signed by both
-  parties. Failure by either party at any time to enforce any of the
-  provisions of this Agreement shall not constitute a waiver by such party
-  of such provision nor in any way affect the validity of this Agreement. 
-  
-  The invalidity of singular provisions does not affect the validity of
-  the entire understanding. The parties are obligated, however, to replace
-  the invalid provisions by a regulation which comes closest to the
-  economic intent of the invalid provision. The same shall apply mutatis
-  mutandis in case of a gap. 
-  
-  IN WITNESS WHEREOF, the LICENSEE hereto have caused this Agreement to be
-  duly executed on the date of the download of the software and by
-  accepting the license conditions by pressing the Acceptance button. 

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