commit: fe9b3c589dc0033b806bf3632e4fa9a445a696cd Author: Michał Górny <mgorny <AT> gentoo <DOT> org> AuthorDate: Thu May 11 06:20:47 2023 +0000 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org> CommitDate: Thu May 11 06:22:22 2023 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fe9b3c58
dev-python/pytables: Backport cython-3 fix Closes: https://bugs.gentoo.org/898710 Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> .../pytables/files/pytables-3.8.0-cython3.patch | 40 ++++++++++++++++++++++ dev-python/pytables/pytables-3.8.0-r3.ebuild | 1 + 2 files changed, 41 insertions(+) diff --git a/dev-python/pytables/files/pytables-3.8.0-cython3.patch b/dev-python/pytables/files/pytables-3.8.0-cython3.patch new file mode 100644 index 000000000000..9ad0b72d224a --- /dev/null +++ b/dev-python/pytables/files/pytables-3.8.0-cython3.patch @@ -0,0 +1,40 @@ +From a70e36f0b0d4fb15b0b50e7ca513c4e4452767cc Mon Sep 17 00:00:00 2001 +From: Matus Valo <matusv...@gmail.com> +Date: Wed, 15 Mar 2023 22:49:07 +0100 +Subject: [PATCH] Fix build errors when compiled using cython 3.0.0b1. + +--- + pyproject.toml | 2 +- + tables/tableextension.pyx | 2 +- + tables/utilsextension.pyx | 2 +- + 3 files changed, 3 insertions(+), 3 deletions(-) + +diff --git a/tables/tableextension.pyx b/tables/tableextension.pyx +index 8f3bb01b..4a50c6ab 100644 +--- a/tables/tableextension.pyx ++++ b/tables/tableextension.pyx +@@ -37,7 +37,7 @@ from .utils import SizeType + from .utilsextension cimport get_native_type, cstr_to_pystr + + # numpy functions & objects +-from hdf5extension cimport Leaf ++from .hdf5extension cimport Leaf + from cpython cimport PyErr_Clear + from libc.stdio cimport snprintf + from libc.stdlib cimport malloc, free +diff --git a/tables/utilsextension.pyx b/tables/utilsextension.pyx +index 5b16dcd3..664e1ea5 100644 +--- a/tables/utilsextension.pyx ++++ b/tables/utilsextension.pyx +@@ -344,7 +344,7 @@ except ImportError: + #--------------------------------------------------------------------- + + # Error handling helpers +-cdef herr_t e_walk_cb(unsigned n, const H5E_error_t *err, void *data) with gil: ++cdef herr_t e_walk_cb(unsigned n, const H5E_error_t *err, void *data) noexcept with gil: + cdef object bt = <object>data # list + #cdef char major_msg[256] + #cdef char minor_msg[256] +-- +2.40.1 + diff --git a/dev-python/pytables/pytables-3.8.0-r3.ebuild b/dev-python/pytables/pytables-3.8.0-r3.ebuild index c2dfebf6f12b..4eb70e76b350 100644 --- a/dev-python/pytables/pytables-3.8.0-r3.ebuild +++ b/dev-python/pytables/pytables-3.8.0-r3.ebuild @@ -52,6 +52,7 @@ python_prepare_all() { local PATCHES=( "${FILESDIR}"/${P}-blosc2.patch "${FILESDIR}"/${P}-optional-cpuinfo.patch + "${FILESDIR}"/${P}-cython3.patch ) export PYTABLES_NO_EMBEDDED_LIBS=1
