commit: f16a3ab142fe2668ba1985cdc09c3c0a6f8840c7 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 22:29:27 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 22:29:27 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f16a3ab1
Initial ebuild --- sci-biology/BRANCH/BRANCH-9999.ebuild | 37 +++++++++++++++++++++++++++++++++++ sci-biology/BRANCH/ChangeLog | 10 ++++++++++ sci-biology/BRANCH/metadata.xml | 9 +++++++++ 3 files changed, 56 insertions(+) diff --git a/sci-biology/BRANCH/BRANCH-9999.ebuild b/sci-biology/BRANCH/BRANCH-9999.ebuild new file mode 100644 index 0000000..74be1b1 --- /dev/null +++ b/sci-biology/BRANCH/BRANCH-9999.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +[ "$PV" == "9999" ] && inherit git-2 + +inherit eutils + +DESCRIPTION="Extend partial transcripts with sequence from other reads or genomic contigs" +HOMEPAGE="" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/baoe/BRANCH"; + KEYWORDS="" +else + SRC_URI="" + KEYWORDS="" +fi + + +LICENSE="Artistic-2" +SLOT="0" +IUSE="" + +DEPEND="sci-biology/blat + sci-libs/lemon" +RDEPEND="${DEPEND}" + +src_compile(){ + cd BRANCH || die + g++ -o BRANCH BRANCH.cpp -lemon -lpthread || die +} + +src_install(){ + dobin BRANCH/BRANCH +} diff --git a/sci-biology/BRANCH/ChangeLog b/sci-biology/BRANCH/ChangeLog new file mode 100644 index 0000000..8954ba6 --- /dev/null +++ b/sci-biology/BRANCH/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/BRANCH +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*BRANCH-9999 (07 Jan 2015) + + 07 Jan 2015; Martin Mokrejs <[email protected]> + +BRANCH-9999.ebuild, +metadata.xml: + initial ebuild + diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/BRANCH/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
