jlec 15/01/08 07:42:51 Modified: metadata.xml ChangeLog Added: trnascan-se-1.31.ebuild Removed: trnascan-se-1.23-r1.ebuild Log: sci-biology/trnascan-se: Version BUmp, #532460 (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.4 sci-biology/trnascan-se/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/metadata.xml?rev=1.4&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/metadata.xml?rev=1.4&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/metadata.xml?r1=1.3&r2=1.4 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/metadata.xml,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- metadata.xml 14 Sep 2006 02:19:14 -0000 1.3 +++ metadata.xml 8 Jan 2015 07:42:51 -0000 1.4 @@ -1,8 +1,8 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <herd>sci-biology</herd> - <longdescription> + <herd>sci-biology</herd> + <longdescription> tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA genes, with a false positive rate of less than one per 15 gigabases, and with a search speed of about 30 kb/second. It was implemented for 1.14 sci-biology/trnascan-se/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/ChangeLog?rev=1.14&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/ChangeLog?rev=1.14&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/ChangeLog?r1=1.13&r2=1.14 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v retrieving revision 1.13 retrieving revision 1.14 diff -u -r1.13 -r1.14 --- ChangeLog 16 Jul 2010 22:09:08 -0000 1.13 +++ ChangeLog 8 Jan 2015 07:42:51 -0000 1.14 @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/trnascan-se -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.13 2010/07/16 22:09:08 hwoarang Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.14 2015/01/08 07:42:51 jlec Exp $ + +*trnascan-se-1.31 (08 Jan 2015) + + 08 Jan 2015; Justin Lecher <[email protected]> -trnascan-se-1.23-r1.ebuild, + +trnascan-se-1.31.ebuild, +files/trnascan-se-1.31-ldflags.patch, + metadata.xml: + Version BUmp, #532460 16 Jul 2010; Markos Chandras <[email protected]> trnascan-se-1.23-r2.ebuild: 1.1 sci-biology/trnascan-se/trnascan-se-1.31.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.31.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.31.ebuild?rev=1.1&content-type=text/plain Index: trnascan-se-1.31.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.31.ebuild,v 1.1 2015/01/08 07:42:51 jlec Exp $ EAPI=5 PERL_EXPORT_PHASE_FUNCTIONS=no inherit eutils perl-module toolchain-funcs DESCRIPTION="tRNA detection in large-scale genome sequences" HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"; SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz" LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" S="${WORKDIR}"/tRNAscan-SE-1.3.1/ src_prepare() { epatch \ "${FILESDIR}"/${P}-ldflags.patch sed \ -e "s:BINDIR = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \ -e "s:LIBDIR = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \ -e "s:MANDIR = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \ -e "s:CC = gcc:CC = $(tc-getCC):" \ -e "s:CFLAGS = -O:CFLAGS = ${CFLAGS}:" \ -i Makefile || die perl_set_version } src_test() { emake PATH="${S}:${PATH}" testrun } src_install() { dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 newman tRNAscan-SE.man tRNAscan-SE.man.1 dodoc MANUAL README Release.history insinto /usr/share/${PN}/ doins *.cm gcode.* Dsignal TPCsignal dodoc Manual.ps insinto ${VENDOR_LIB} doins -r tRNAscanSE }
