commit: f1305f2410140aee98085c7448eae116695a4b04 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Jan 10 01:20:02 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Jan 10 01:20:02 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f1305f24
new package; install *.pm into PERL5LIB/cegma and pass that via env.d --- sci-biology/cegma/ChangeLog | 8 ++++++++ sci-biology/cegma/cegma-2.5.ebuild | 36 ++++++++++++++++++++++++++++++++++++ sci-biology/cegma/metadata.xml | 9 +++++++++ 3 files changed, 53 insertions(+) diff --git a/sci-biology/cegma/ChangeLog b/sci-biology/cegma/ChangeLog new file mode 100644 index 0000000..8e87015 --- /dev/null +++ b/sci-biology/cegma/ChangeLog @@ -0,0 +1,8 @@ +# ChangeLog for sci-biology/cegma +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 10 Jan 2015; Martin Mokrejs <[email protected]> +cegma-2.5.ebuild, + +metadata.xml: + new package; install *.pm into PERL5LIB/cegma and pass that via env.d + diff --git a/sci-biology/cegma/cegma-2.5.ebuild b/sci-biology/cegma/cegma-2.5.ebuild new file mode 100644 index 0000000..ef8dfe5 --- /dev/null +++ b/sci-biology/cegma/cegma-2.5.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Use set of 458 core proteins to predict genes in a genome and use them for training to find all genes" +HOMEPAGE="http://korflab.ucdavis.edu/datasets/cegma"; +SRC_URI="http://korflab.ucdavis.edu/datasets/cegma/CEGMA_v"${PV}".tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-lang/perl + sci-biology/wise + >=sci-biology/hmmer-3.0 + sci-biology/geneid + sci-biology/ncbi-tools++" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/CEGMA_v${PV} + +src_install(){ + dobin bin/* + eval `perl '-V:installvendorlib'` + vendor_lib_install_dir="${installvendorlib}" + dodir ${vendor_lib_install_dir}/cegma + insinto ${vendor_lib_install_dir}/cegma + doins lib/*.pm + + echo "PERL5LIB="${vendor_lib_install_dir}"/cegma" > ${S}"/99cegma" + # echo "CEGMATMP=/var/tmp" >> ${S}"/99cegma" + doenvd ${S}"/99cegma" || die +} diff --git a/sci-biology/cegma/metadata.xml b/sci-biology/cegma/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/cegma/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
