commit: fb4ef931e8f0177f06753635416595180b789995 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sat Jan 10 14:17:58 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Jan 10 14:17:58 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fb4ef931
sci-biology/ESTate: Soma QA and polishing Package-Manager: portage-2.2.15 --- sci-biology/ESTate/ChangeLog | 3 +++ sci-biology/ESTate/ESTate-0.5.ebuild | 28 +++++++++++++++++++--------- 2 files changed, 22 insertions(+), 9 deletions(-) diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog index 0e86bdb..879e7b4 100644 --- a/sci-biology/ESTate/ChangeLog +++ b/sci-biology/ESTate/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jan 2015; Justin Lecher <[email protected]> ESTate-0.5.ebuild: + Soma QA and polishing + 09 Jan 2015; Martin Mokrejs <[email protected]> ESTate-0.5.ebuild: improve description and emphasize the ORF finder can overcome frameshifts in CDS diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild index 3e459b0..1622516 100644 --- a/sci-biology/ESTate/ESTate-0.5.ebuild +++ b/sci-biology/ESTate/ESTate-0.5.ebuild @@ -4,9 +4,12 @@ EAPI=5 -DESCRIPTION="ORF finding despite frameshifts, EST clustering (framefinder, estcluster, usage counter, revcomp and translate)" +inherit eutils + +DESCRIPTION="ORF finding despite frameshifts, EST clustering" HOMEPAGE="http://www.ebi.ac.uk/~guy/estate"; -SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz +SRC_URI=" + http://www.ebi.ac.uk/~guy/estate/estate.tar.gz http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz"; LICENSE="GPL-2" @@ -14,23 +17,30 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -DEPEND="" -RDEPEND="${DEPEND}" - S="${WORKDIR}"/estate src_prepare(){ - sed -e "s/^CC/#CC/" -e "s/^LDFLAGS/#LDFLAGS/" -e "s/^CFLAGS/#CFLAGS/" -e "s/LDFLAGS/CFLAGS/" -i src/Makefile || die + sed \ + -e "s/^CC/#CC/" \ + -e "s/^LDFLAGS/#LDFLAGS/" \ + -e "s/^CFLAGS/#CFLAGS/" \ + -e "s/LDFLAGS/CFLAGS/" \ + -i src/Makefile || die } src_install(){ dobin bin/* doman doc/man/man1/*.1 doc/man/man7/*.7 + insinto /usr/share/ESTate/etc doins etc/ESTaterc + insinto /usr/share/ESTate/example doins example/embl59* example/drosophila* - dodoc ANNOUNCE.txt README.txt - dodoc "${DISTDIR}"/thesis.ps.gz - einfo "Additionally you may want to install sci-biology/wcd which can be used by ESTate" + + dodoc ANNOUNCE.txt README.txt "${DISTDIR}"/thesis.ps.gz +} + +pkg_postinst() { + optfeature "additional features" sci-biology/wcd }
