jlec 15/01/23 11:48:13 Modified: ChangeLog Added: mira-4.0.2.ebuild Log: sci-biology/mira: Version BUmp, thanks Martin Mokrejš for the work (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.29 sci-biology/mira/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mira/ChangeLog?rev=1.29&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mira/ChangeLog?rev=1.29&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mira/ChangeLog?r1=1.28&r2=1.29 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v retrieving revision 1.28 retrieving revision 1.29 diff -u -r1.28 -r1.29 --- ChangeLog 23 Jan 2015 11:25:31 -0000 1.28 +++ ChangeLog 23 Jan 2015 11:48:13 -0000 1.29 @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mira # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.28 2015/01/23 11:25:31 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.29 2015/01/23 11:48:13 jlec Exp $ + +*mira-4.0.2 (23 Jan 2015) + + 23 Jan 2015; Justin Lecher <j...@gentoo.org> +mira-4.0.2.ebuild: + Version BUmp, thanks Martin Mokrejš for the work 23 Jan 2015; Justin Lecher <j...@gentoo.org> mira-3.9.18.ebuild: Add workaroung for m4 dir location, #536172 1.1 sci-biology/mira/mira-4.0.2.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mira/mira-4.0.2.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mira/mira-4.0.2.ebuild?rev=1.1&content-type=text/plain Index: mira-4.0.2.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-4.0.2.ebuild,v 1.1 2015/01/23 11:48:13 jlec Exp $ EAPI=5 MIRA_3RDPARTY_PV="06-07-2012" MY_PV="${PV/_}" # convert from mira-4.0_rc2 (Gentoo ebuild filename derived) to mira-4.0rc2 (upstream fromat) inherit autotools eutils multilib DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" HOMEPAGE="http://www.chevreux.org/projects_mira.html"; SRC_URI=" http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/"${PN}"-"${MY_PV}".tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" # http://sourceforge.net/projects/mira-assembler/files/MIRA/development/${P}.tar.bz2 # mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" S="${WORKDIR}"/"${PN}"-"${MY_PV}" SLOT="0" LICENSE="GPL-2" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="doc" CDEPEND=" dev-libs/boost dev-util/google-perftools" DEPEND="${CDEPEND} app-editors/vim-core dev-libs/expat" RDEPEND="${CDEPEND}" #DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED # THANKS doc/3rdparty/scaffolding_MIRA_BAMBUS.pdf ) DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED THANKS ) src_prepare() { find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die epatch \ "${FILESDIR}"/${PN}-3.4.0.2-boost-1.50.patch sed \ -e "s:-O[23]::g" \ -e "s:-funroll-loops::g" \ -i configure.ac || die eautoreconf } src_configure() { econf \ --with-boost="${EPREFIX}/usr/$(get_libdir)" \ --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ --with-boost-thread=boost_thread-mt } #src_compile() { # base_src_compile # # TODO: resolve docbook incompatibility for building docs # if use doc; then emake -C doc clean docs || die; fi #} src_install() { default dodoc ${DOCS[@]} dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} dodoc "${WORKDIR}"/3rdparty/{README.txt,midi_screen.fasta} } pkg_postinst() { einfo "Documentation is no longer built, you can find it at:" einfo "http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html"; }
