commit: 9cc8e30d7ad88065581085af040fa878b2251a1d Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Mon Dec 11 17:23:24 2023 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Mon Dec 11 17:23:24 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9cc8e30d
sci-biology/clview: treeclean Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/clview/clview-0.1.ebuild | 108 ----------------------------------- sci-biology/clview/metadata.xml | 15 ----- 2 files changed, 123 deletions(-) diff --git a/sci-biology/clview/clview-0.1.ebuild b/sci-biology/clview/clview-0.1.ebuild deleted file mode 100644 index 2f200426d..000000000 --- a/sci-biology/clview/clview-0.1.ebuild +++ /dev/null @@ -1,108 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="clview is an assembly .ace file viewer from TIGR Gene Indices project tools" -HOMEPAGE="https://sourceforge.net/projects/clview"; -SRC_URI=" - https://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_src.tar.gz - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_linux_i386.tar.gz"; - -# the ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/tgi_cpp_library.tar.gz -# contain maybe an older but definitely larger set of .cpp files compared to clview/gcl/ -# contents. clview compiles against both versions with same warning messages from g++. -# -# mokrejs@vrapenec$ ls -la /var/tmp/portage/sci-biology/clview-0.1/work/gclib/ -# total 188 -# drwxr-xr-x 2 mmokrejs mmokrejs 4096 Dec 2 22:23 . -# drwx------ 5 mmokrejs portage 4096 Dec 2 22:23 .. -# -rw-r--r-- 1 mmokrejs mmokrejs 11632 Sep 17 2008 AceParser.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 906 Sep 14 2008 AceParser.h -# -rw-r--r-- 1 mmokrejs mmokrejs 32276 Dec 2 22:23 AceParser.o -# -rw-r--r-- 1 mmokrejs mmokrejs 11012 Jan 22 2009 GBase.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 9200 Dec 16 2008 GBase.h -# -rw-r--r-- 1 mmokrejs mmokrejs 8844 Dec 2 22:23 GBase.o -# -rw-r--r-- 1 mmokrejs mmokrejs 16813 Jul 29 2008 GHash.hh -# -rw-r--r-- 1 mmokrejs mmokrejs 16516 Sep 10 2008 GList.hh -# -rw-r--r-- 1 mmokrejs mmokrejs 11221 Jan 22 2009 LayoutParser.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 6246 Sep 14 2008 LayoutParser.h -# -rw-r--r-- 1 mmokrejs mmokrejs 32956 Dec 2 22:23 LayoutParser.o -# mokrejs@vrapenec$ ls -la /var/tmp/portage/sci-biology/clview-0.1/work/tgi_cl/gcl/ -# total 268 -# drwxr-xr-x 2 mmokrejs mmokrejs 4096 Nov 18 2008 . -# drwxr-xr-x 3 mmokrejs mmokrejs 4096 Oct 18 2006 .. -# -rw-r--r-- 1 mmokrejs mmokrejs 9515 Nov 7 2005 AceParser.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 886 Nov 7 2005 AceParser.h -# -rw-r--r-- 1 mmokrejs mmokrejs 10768 Nov 7 2005 BitHash.hh -# -rw-r--r-- 1 mmokrejs mmokrejs 7250 Nov 7 2005 GArgs.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 2507 Nov 7 2005 GArgs.h -# -rw-r--r-- 1 mmokrejs mmokrejs 10156 Nov 18 2008 GBase.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 8142 Nov 18 2008 GBase.h -# -rw-r--r-- 1 mmokrejs mmokrejs 14742 Nov 7 2005 GCdbYank.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 1831 Nov 7 2005 GCdbYank.h -# -rw-r--r-- 1 mmokrejs mmokrejs 16723 Nov 7 2005 GFastaFile.h -# -rw-r--r-- 1 mmokrejs mmokrejs 16245 Nov 7 2005 GHash.hh -# -rw-r--r-- 1 mmokrejs mmokrejs 15561 Nov 7 2005 GList.hh -# -rw-r--r-- 1 mmokrejs mmokrejs 28 Nov 7 2005 GReadBuf.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 4022 Nov 7 2005 GReadBuf.h -# -rw-r--r-- 1 mmokrejs mmokrejs 48 Nov 7 2005 GShMem.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 4012 Nov 7 2005 GShMem.h -# -rw-r--r-- 1 mmokrejs mmokrejs 32875 Nov 7 2005 GString.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 8453 Nov 7 2005 GString.h -# -rw-r--r-- 1 mmokrejs mmokrejs 11157 Nov 7 2005 LayoutParser.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 6063 Nov 7 2005 LayoutParser.h -# -rw-r--r-- 1 mmokrejs mmokrejs 20253 Nov 7 2005 gcdb.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 6941 Nov 7 2005 gcdb.h -# -rw-r--r-- 1 mmokrejs mmokrejs 8998 Nov 7 2005 gcompress.cpp -# -rw-r--r-- 1 mmokrejs mmokrejs 3670 Nov 7 2005 gcompress.h -# - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -DEPEND="=x11-libs/fox-1.6*" -RDEPEND="${DEPEND}" - -S=${WORKDIR} - -src_unpack() { - unpack clview_src.tar.gz -} - -src_prepare() { - default - # FIXME: we have to run `/usr/bin/fox-config --cflags' to yield - # `-I/usr/include/fox-1.6' - # similarly `fox-config --libs' to yield e.g. - # `-lFOX-1.6 -lXext -lX11 -lXft -lXrender -lfontconfig -lfreetype -lz -lX11 - # -lXcursor -lXrandr -ldl -lpthread -lrt -ljpeg -lpng -ltiff -lz -lbz2 -lm - # -lcups -lnsl -lGLU -lGL' - FOXVERSION=`WANT_FOX="1.6" fox-config --version` - FOXPREFIX=`WANT_FOX="1.6" fox-config --prefix` - FOXINCPATH=`WANT_FOX="1.6" fox-config --cflags` - FOXLIBS=`WANT_FOX="1.6" fox-config --libs` - einfo "Discovered path to fox ${FOXVERSION} files: ${FOXINCPATH}\n${FOXLIBS}" - - sed -i "s#FOXPREFIX = /mylocal/geo#FOXPREFIX = ${FOXPREFIX}#" clview/Makefile || die "Failed to hack FOXPREFIX in clview/Makefile" - sed -i "s#FOXINCDIR := .*#FOXINCDIR := ${FOXINCPATH}#" clview/Makefile || die "Failed to hack FOXINCDIR in clview/Makefile" - sed -i "s#-I\${FOXINCDIR}#\${FOXINCDIR}#" clview/Makefile || die "Failed to revert the extra -I we introduced on a previous line to clview/Makefile" - sed -i "s#FOXLIBDIR := .*#FOXLIBDIR := ${FOXPREFIX}/lib#" clview/Makefile || die "Failed to hack FOXLIBDIR in clview/Makefile" - sed -i "s#LOADLIBS :=.*#LOADLIBS := ${FOXLIBS}#" clview/Makefile || die "Failed to hack LOADLIBS in clview/Makefile" - sed -i "s#-I-#-I #" clview/Makefile || die - - # see tgi_cl/gcl/ - sed -i "s#TGICLASSDIR := /tucan/geo/src/tgi_cl#TGICLASSDIR := ../gcl#" clview/Makefile || die -} - -src_compile(){ - cd "${S}"/clview || die - default -} - -src_install() { - # install at least the binaries for clview when we cannot compile it - dobin clview/clview -} diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml deleted file mode 100644 index 7adf609cd..000000000 --- a/sci-biology/clview/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">clview</remote-id> - </upstream> -</pkgmetadata>
