commit: 828d4527193e60d8964f0a57c99813b6656182c9 Author: Andrés Becerra <andres.becerra <AT> gmail <DOT> com> AuthorDate: Sat Jan 20 20:06:50 2024 +0000 Commit: Andrés Becerra <andres.becerra <AT> gmail <DOT> com> CommitDate: Sat Jan 20 20:06:50 2024 +0000 URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=828d4527
sci-biology/cytoscape-bin: new package Signed-off-by: Andrés Becerra <andres.becerra <AT> gmail.com> sci-biology/cytoscape-bin/Manifest | 1 + .../cytoscape-bin/cytoscape-bin-3.10.1.ebuild | 41 ++++++++++++++++++++++ sci-biology/cytoscape-bin/metadata.xml | 16 +++++++++ 3 files changed, 58 insertions(+) diff --git a/sci-biology/cytoscape-bin/Manifest b/sci-biology/cytoscape-bin/Manifest new file mode 100644 index 0000000000..cf3a195ac3 --- /dev/null +++ b/sci-biology/cytoscape-bin/Manifest @@ -0,0 +1 @@ +DIST cytoscape-unix-3.10.1.tar.gz 344323313 BLAKE2B ffb27144b9c717762c4b96ea192cbde5a83e0e6264022e59f007a5989d0ba636959e459361ccc36a38ffc5615074e644daef5835cb56040e8f6072e279569c59 SHA512 4b37e72e339a60a5275ab31f112af5b042e190c26d6557c66e9ff5bc0aff547b481548c66696442ea5ef8df4bc3c191ef0f3f675060d033c2535ac954567218e diff --git a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild new file mode 100644 index 0000000000..b64d213453 --- /dev/null +++ b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI="8" + +inherit desktop java-pkg-2 + +DESCRIPTION="A visualization platform for molecular interaction networks" +HOMEPAGE="http://www.cytoscape.org/"; +SRC_URI="https://github.com/cytoscape/cytoscape/releases/download/${PV}/cytoscape-unix-${PV}.tar.gz"; + +LICENSE="LGPL-2.1" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" +RDEPEND=">=virtual/jre-11-r2" + +S="${WORKDIR}" + +src_install() { + MY_PN="cytoscape" + MYW="${WORKDIR}/${MY_PN}-unix-${PV}" + + insinto "/opt/${MY_PN}" + doins -r ${MYW}/apps + doins -r ${MYW}/framework + doins -r ${MYW}/sampleData + + cd ${MYW} + sh gen_vmoptions.sh + doins Cytoscape.vmoptions + exeinto "/opt/${MY_PN}" + doexe "${MYW}/${MY_PN}.sh" + dosym "${EPREFIX}/opt/${MY_PN}/${MY_PN}.sh" "${EPREFIX}/opt/bin/${MY_PN}" + + exeinto "/opt/${MY_PN}/framework/bin" + doexe framework/bin/karaf + + newicon framework/cytoscape_logo_512.png cytoscape_logo.png + make_desktop_entry ${MY_PN} CytoScape cytoscape_logo Science +} diff --git a/sci-biology/cytoscape-bin/metadata.xml b/sci-biology/cytoscape-bin/metadata.xml new file mode 100644 index 0000000000..ba5084d0c1 --- /dev/null +++ b/sci-biology/cytoscape-bin/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Andrés Becerra Sandoval</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>>Gentoo Biology Project</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Proxy Maintainers</name> + </maintainer> +</pkgmetadata>
