commit: 5f89fde86285ba2b98d3b026165554b4c0d5d9f2
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Jan 25 11:28:46 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Jan 25 11:28:46 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f89fde8
dev-python/hdmf-zarr: new package, add 0.5.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch | 28 +++++++++++++++++++
dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild | 32 ++++++++++++++++++++++
dev-python/hdmf-zarr/metadata.xml | 16 +++++++++++
3 files changed, 76 insertions(+)
diff --git a/dev-python/hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch
b/dev-python/hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch
new file mode 100644
index 000000000..d82c30960
--- /dev/null
+++ b/dev-python/hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch
@@ -0,0 +1,28 @@
+diff --git a/pyproject.toml b/pyproject.toml
+index 4008b3b..40e281a 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -62,9 +62,6 @@ exclude = [".git_archival.txt"]
+ [tool.hatch.build.targets.wheel]
+ packages = ["src/hdmf_zarr"]
+
+-[tool.pytest.ini_options]
+-addopts = "--cov --cov-report html"
+-
+ [tool.codespell]
+ skip =
"htmlcov,.git,.mypy_cache,.pytest_cache,.coverage,*.pdf,*.svg,venvs,.tox,./docs/_build/*,*.ipynb"
+ ignore-words-list = "datas"
+diff --git a/tox.ini b/tox.ini
+index 720a97f..66d0df3 100644
+--- a/tox.ini
++++ b/tox.ini
+@@ -28,8 +28,7 @@ commands =
+ [testenv:localcoverage]
+ basepython = python3.11
+ commands =
+- pytest --cov=hdmf_zarr
+- coverage html -d tests/coverage/htmlcov
++ pytest
+
+ # Test with python 3.11; pinned dev and optional reqs
+ [testenv:py311-optional]
diff --git a/dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild
b/dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild
new file mode 100644
index 000000000..692197867
--- /dev/null
+++ b/dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=hatchling
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="Zarr I/O backend for HDMF"
+HOMEPAGE="https://github.com/hdmf-dev/hdmf-zarr";
+#SRC_URI="https://github.com/hdmf-dev/hdmf-zarr/archive/refs/tags/${PV}.tar.gz
-> ${P}.tar.gz"
+KEYWORDS="~amd64 ~x86"
+
+LICENSE="BSD"
+SLOT="0"
+
+RDEPEND="
+ dev-python/hdmf[${PYTHON_USEDEP}]
+ dev-python/numcodecs[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/threadpoolctl[${PYTHON_USEDEP}]
+ dev-python/zarr[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+
+PATCHES=(
+ "${FILESDIR}/${P}-coverage.patch"
+)
+
+distutils_enable_tests pytest
diff --git a/dev-python/hdmf-zarr/metadata.xml
b/dev-python/hdmf-zarr/metadata.xml
new file mode 100644
index 000000000..1ced471a1
--- /dev/null
+++ b/dev-python/hdmf-zarr/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="person">
+ <email>[email protected]</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>[email protected]</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="github">hdmf-dev/hdmf-zarr</remote-id>
+ <remote-id type="pypi">hdmf-zarr</remote-id>
+ </upstream>
+</pkgmetadata>
