commit:     f90551a4ff3929b105533112036b88f82069c427
Author:     Eli Schwartz <eschwartz93 <AT> gmail <DOT> com>
AuthorDate: Thu Feb 29 02:12:25 2024 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Feb 29 02:18:39 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f90551a4

sci-biology/exonerate: mark LTO-unsafe

Closes: https://bugs.gentoo.org/862264
Signed-off-by: Eli Schwartz <eschwartz93 <AT> gmail.com>
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/exonerate/exonerate-2.2.0-r3.ebuild | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/sci-biology/exonerate/exonerate-2.2.0-r3.ebuild 
b/sci-biology/exonerate/exonerate-2.2.0-r3.ebuild
index 20110bdb6f1c..9d7683b6dc4d 100644
--- a/sci-biology/exonerate/exonerate-2.2.0-r3.ebuild
+++ b/sci-biology/exonerate/exonerate-2.2.0-r3.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-inherit autotools toolchain-funcs
+inherit autotools flag-o-matic toolchain-funcs
 
 DESCRIPTION="Generic tool for pairwise sequence comparison"
 HOMEPAGE="https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate";
@@ -27,6 +27,11 @@ src_prepare() {
 }
 
 src_configure() {
+       # -Werror=lto-type-mismatch
+       # https://bugs.gentoo.org/862264
+       # Upstream doesn't use a bug tracker, so I fired them an email about 
it. -- Eli
+       filter-lto
+
        # the bootstrapping code loads AR and CC from the environment
        tc-export CC RANLIB
        export C4_AR="$(tc-getAR)"

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