commit: f7197b7ce3f627083bdac70048b0711968472b49 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Feb 2 20:51:29 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Feb 2 20:51:29 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f7197b7c
sci-biology/tagdust: new package Package-Manager: portage-2.2.15 --- sci-biology/tagdust/ChangeLog | 9 ++++++++ sci-biology/tagdust/metadata.xml | 9 ++++++++ sci-biology/tagdust/tagdust-20101028.ebuild | 33 +++++++++++++++++++++++++++++ 3 files changed, 51 insertions(+) diff --git a/sci-biology/tagdust/ChangeLog b/sci-biology/tagdust/ChangeLog new file mode 100644 index 0000000..8d2d813 --- /dev/null +++ b/sci-biology/tagdust/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/tagdust +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*tagdust-20101028 (02 Feb 2015) + + 02 Feb 2015; Martin Mokrejs <[email protected]> +metadata.xml, + +tagdust-20101028.ebuild: + sci-biology/tagdust: new package diff --git a/sci-biology/tagdust/metadata.xml b/sci-biology/tagdust/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/tagdust/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/tagdust/tagdust-20101028.ebuild b/sci-biology/tagdust/tagdust-20101028.ebuild new file mode 100644 index 0000000..b9e0862 --- /dev/null +++ b/sci-biology/tagdust/tagdust-20101028.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Trim multimers of various primers/adapter from Illumina datasets" +HOMEPAGE="http://genome.gsc.riken.jp/osc/english/dataresource"; +SRC_URI="http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/tagdust + +src_prepare(){ + sed -e "s/^CFLAGS/#CFLAGS/" -e "s#/usr/local/bin#\$(DESTDIR)/usr/bin#" \ + -e "s#/usr/share/man/#\$(DESTDIR)/usr/share/man/#" -i Makefile +} + +src_install(){ + doman tagdust.1 + dobin tagdust + insinto /usr/share/tagdust/Illumina + doins "test/"solexa*.fa + insinto /usr/share/tagdust + doins "test/"protocol.txt README +}
