commit: b12daea1ac0483c737c21903be9d5b7aa7524b38
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 20 06:05:04 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Mar 20 12:50:25 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b12daea1
dev-python/scipy: Bump to 1.13.0_rc1
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/scipy/Manifest | 1 +
dev-python/scipy/scipy-1.13.0_rc1.ebuild | 155 +++++++++++++++++++++++++++++++
2 files changed, 156 insertions(+)
diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index 152814475f62..b4d0a815a2b8 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,5 +1,6 @@
DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B
2b35c24522b2bd498b4ebe84a854c8ec1e62917e7b899b3e3526abb9780c1e56f8e776a3bb1eab1bedb17a273fac881e5ffdaac808084a4f5a5f97428bff1029
SHA512
6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf
DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B
a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031
SHA512
2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb
DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B
03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64
SHA512
376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7
+DIST scipy-1.13.0rc1.tar.gz 57201979 BLAKE2B
0e257dbe3707b373045eef21384f64847017ffd281e41acb4358e90fec7be5983462849fb199e0bf2ae7944d2a1511c181bd4b1d0ba01f8691062fb9fdebd689
SHA512
de03fdd61bde610bebe7ede8ef22c72e2f65f68e3584b70069b59539a1453a0f1b34baa065ff3cbcb109d3e9a02c705a964116ca11d85700c58ad094772962e2
DIST scipy-html-1.11.0.zip 50421508 BLAKE2B
cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065
SHA512
33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253
DIST scipy-html-1.11.2.zip 50435722 BLAKE2B
460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5
SHA512
986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797
diff --git a/dev-python/scipy/scipy-1.13.0_rc1.ebuild
b/dev-python/scipy/scipy-1.13.0_rc1.ebuild
new file mode 100644
index 000000000000..37560902441b
--- /dev/null
+++ b/dev-python/scipy/scipy-1.13.0_rc1.ebuild
@@ -0,0 +1,155 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( pypy3 python3_{10..12} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit flag-o-matic fortran-2 distutils-r1
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+ https://scipy.org/
+ https://github.com/scipy/scipy/
+ https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+ inherit git-r3
+
+ # Need submodules, so git for now.
+ EGIT_REPO_URI="https://github.com/scipy/scipy";
+ EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+ EGIT_SUBMODULES=( '*' )
+else
+ inherit pypi
+
+ # Upstream is often behind with doc updates
+ #DOC_PV=${PV}
+ DOC_PV=1.11.2
+
+ SRC_URI+="
+ doc? (
+
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+ )"
+
+ if [[ ${PV} != *rc* ]] ; then
+ KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390
~sparc ~x86"
+ fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +fortran test-rust"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+ >=dev-python/numpy-1.22.4[lapack,${PYTHON_USEDEP}]
+ sci-libs/arpack:=
+ sci-libs/umfpack
+ virtual/cblas
+ >=virtual/lapack-3.8
+"
+RDEPEND="
+ ${DEPEND}
+ dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ dev-lang/swig
+ >=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
+ >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
+ >=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
+ >=dev-build/meson-1.1.0
+ !kernel_Darwin? ( dev-util/patchelf )
+ virtual/pkgconfig
+ doc? ( app-arch/unzip )
+ fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
+ test? (
+ >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
+ )
+ test-rust? (
+ dev-python/pooch[${PYTHON_USEDEP}]
+ )
+"
+
+EPYTEST_XDIST=1
+distutils_enable_tests pytest
+
+src_unpack() {
+ default
+
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+ fi
+}
+
+python_configure_all() {
+ # https://github.com/scipy/scipy/pull/19857
+ # Fixed in 1.13.0
+ filter-lto
+ DISTUTILS_ARGS=(
+ -Dblas=blas
+ -Dlapack=lapack
+ -Duse-pythran=$(usex fortran true false)
+ )
+}
+
+python_test() {
+ cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+
+ local EPYTEST_DESELECT=(
+ # Network
+
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
+ scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
+ scipy/datasets/tests/test_data.py::TestDatasets::test_face
+
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
+
+ # Precision issue with diff. blas?
+
scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
+
+ # Crashes with assertion, not a regression
+ # https://github.com/scipy/scipy/issues/19321
+ scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
+
+ # timeouts
+ scipy/sparse/linalg/tests/test_propack.py::test_examples
+ # hang or incredibly slow
+
scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
+
scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
+
+ # TODO
+
scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
+ )
+ local EPYTEST_IGNORE=()
+
+ if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
+ EPYTEST_IGNORE+=(
+ scipy/datasets/tests/test_data.py
+ )
+ fi
+
+ case ${EPYTHON} in
+ pypy3)
+ EPYTEST_DESELECT+=(
+ # fd leaks in tests
+ # https://github.com/scipy/scipy/issues/19553
+
scipy/fft/_pocketfft/tests/test_real_transforms.py
+ # TODO
+
'scipy/special/tests/test_data.py::test_boost[<Data for expi:
expinti_data_long_ipp-expinti_data_long>]'
+ )
+ ;;
+ esac
+
+ local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+ epytest scipy
+}
+
+python_install_all() {
+ use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+ distutils-r1_python_install_all
+}
