commit: 597997e35db5451deb6079df099686bc085b732a
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Mar 21 22:10:03 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Mar 21 22:15:29 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=597997e3
sci-biology/neuroconv: version bump, treeclean
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/neuroconv/neuroconv-0.2.4.ebuild | 56 ----------------------
...conv-0.4.6-r1.ebuild => neuroconv-0.4.8.ebuild} | 6 +++
2 files changed, 6 insertions(+), 56 deletions(-)
diff --git a/sci-biology/neuroconv/neuroconv-0.2.4.ebuild
b/sci-biology/neuroconv/neuroconv-0.2.4.ebuild
deleted file mode 100644
index c554ce791..000000000
--- a/sci-biology/neuroconv/neuroconv-0.2.4.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="Create NWB files from proprietary formats."
-HOMEPAGE="https://github.com/catalystneuro/neuroconv";
-SRC_URI="https://github.com/catalystneuro/neuroconv/archive/refs/tags/v${PV}.tar.gz
-> ${P}.gh.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="+ecephys +icephys +ophys"
-
-RDEPEND="
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/hdmf[${PYTHON_USEDEP}]
- dev-python/jsonschema[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/psutil[${PYTHON_USEDEP}]
- dev-python/pynwb[${PYTHON_USEDEP}]
- dev-python/pyyaml[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/tqdm[${PYTHON_USEDEP}]
- dev-vcs/dandi-cli[${PYTHON_USEDEP}]
- ecephys? (
- dev-python/spikeinterface[${PYTHON_USEDEP}]
- )
- icephys? (
- dev-python/neo[${PYTHON_USEDEP}]
- )
- ophys? (
- sci-biology/roiextractors[${PYTHON_USEDEP}]
- )
-"
-BDEPEND="
- test? (
- dev-python/parameterized[${PYTHON_USEDEP}]
- )
-"
-
-distutils_enable_tests pytest
-
-python_test() {
- # Additional tests require complex data getting infrastructure, ophys
tests still have issues:
- # https://github.com/catalystneuro/neuroconv/issues/305
- local my_tests=( "tests/test_minimal" )
- use ecephys && my_tests+=( "tests/test_ecephys" )
- #use ophys && my_tests+=( "tests/test_ophys" )
- epytest ${my_tests[*]// /|}
-}
diff --git a/sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild
b/sci-biology/neuroconv/neuroconv-0.4.8.ebuild
similarity index 88%
rename from sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild
rename to sci-biology/neuroconv/neuroconv-0.4.8.ebuild
index 1676aa6b7..a3012611f 100644
--- a/sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild
+++ b/sci-biology/neuroconv/neuroconv-0.4.8.ebuild
@@ -49,6 +49,12 @@ BDEPEND="
distutils_enable_tests pytest
+# Reported upstream:
+# https://github.com/catalystneuro/neuroconv/issues/785
+EPYTEST_DESELECT=(
+
tests/test_ecephys/test_mock_recording_interface.py::TestMockRecordingInterface::test_conversion_as_lone_interface
+)
+
python_test() {
# Additional tests require complex data getting infrastructure, ophys
tests still have issues:
# https://github.com/catalystneuro/neuroconv/issues/305
