commit: 177fac774c00bde8524d9a0145bfcdd48a160710
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 11 03:15:55 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu Apr 11 04:20:01 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=177fac77
dev-python/scikit-image: Bump to 0.23.1
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/scikit-image/Manifest | 1 +
dev-python/scikit-image/scikit-image-0.23.1.ebuild | 97 ++++++++++++++++++++++
2 files changed, 98 insertions(+)
diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index ecdbdaba9105..19374f7c05eb 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,3 +1,4 @@
DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2
143900901 BLAKE2B
c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb
SHA512
d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
DIST scikit_image-0.22.0.tar.gz 22685018 BLAKE2B
7d0a65f75f5a58211e21501d6cc6a638f1d36e9a2198a3ad9ff2f230890496c41d5e6cdaed02bbaa62f26aa57fd24fc993656cbdfc2c9c9750147d0f325e56f1
SHA512
4b8c097cd5465f57b1c0879363fe3bdc0941decf2d1f8a881f13f2b7f3207c425f3a0cdcb4be0eed7b33d3ac2f3f8b1835d1cfa69cd3fa2ff5e0be11385fef48
DIST scikit_image-0.23.0rc2.tar.gz 22677632 BLAKE2B
b663065650e25a33ffec80ddd05df622bc62b1c1d3d0a831488d4dd23291b4f125458ae335782762b1d4dc1efa8cbedd5fcd7e6bbe62003967209e4ca4179bca
SHA512
aa5f27d571ea49276aba8443a691b30a576d52145a17f13b8ea080a2abf0ed01c57fe50324c05e72bb4662a9ddbb480be94be6784ac3220ed6853b12d94ae06b
+DIST scikit_image-0.23.1.tar.gz 22676819 BLAKE2B
2d02bab4f8d6217c842f428a6758d467393a73a05ac741a49cd27fa6ee48335cf8fed4cc104296388d0e23c61ac3603f72d7bab44986c0d3d4073da383f89726
SHA512
7450387c3adcac15148c3ae4f43fd7da97ceabf3522302b7f3ab4cd02e5a9ec2cd9623f29e4aec3bb47668a231e0900724804619bb91aaaf97283d29c34392e6
diff --git a/dev-python/scikit-image/scikit-image-0.23.1.ebuild
b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
new file mode 100644
index 000000000000..cb08918d42e9
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
@@ -0,0 +1,97 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+ https://scikit-image.org/
+ https://github.com/scikit-image/scikit-image/
+ https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+ test? (
+
https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+ )
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+ >=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+ >=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+ >=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+ >=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+ >=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+ >=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+ >=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ test? (
+ dev-python/pytest-localserver[${PYTHON_USEDEP}]
+ )
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+ # for some reason, upstream refetches data that's already in the tarball
+ # sigh
+ mkdir -p "${HOME}/.cache/scikit-image" || die
+ mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+ # This is a true horror, sigh
+ local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+ pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+ cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+ Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+ brain.tiff cells3d.tif eagle.png \
+ "${cache_dir}/" || die
+ cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG
"${cache_dir}"/skin.jpg || die
+ cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif
|| die
+ cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif
|| die
+ cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+ cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+ cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+ popd > /dev/null || die
+
+ distutils-r1_src_test
+}
+
+python_test() {
+ local EPYTEST_DESELECT=(
+ # tests for downloading all data files, including these not
needed
+ # by any actual tests
+ data/tests/test_data.py::test_download_all_with_pooch
+ )
+
+ local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+ epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+ optfeature "FITS io capability" dev-python/astropy
+ optfeature "GTK" dev-python/pygtk
+ optfeature "Parallel computation" dev-python/dask
+ optfeature "io plugin providing most standard formats" dev-python/imread
+ optfeature "plotting" dev-python/matplotlib
+ optfeature "wavelet transformations" dev-python/pywavelets
+ optfeature "io plugin providing a wide variety of formats, including
specialized formats using in medical imaging." dev-python/simpleitk
+}
