commit: ccce71a38571bf752f650f36417cb50fb69edaa8 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Fri May 24 08:44:40 2024 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Fri May 24 08:44:40 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ccce71a3
sci-biology/raxml: drop 7.2.6 Closes: https://bugs.gentoo.org/822408 Closes: https://bugs.gentoo.org/831489 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/raxml/Manifest | 1 - sci-biology/raxml/files/raxml-7.2.6-makefile.patch | 29 ----------------- sci-biology/raxml/raxml-7.2.6.ebuild | 37 ---------------------- 3 files changed, 67 deletions(-) diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest index 648666691355..56416ac10d7f 100644 --- a/sci-biology/raxml/Manifest +++ b/sci-biology/raxml/Manifest @@ -1,2 +1 @@ -DIST RAxML-7.2.6.tar.bz2 202803 BLAKE2B 579676ff9fad1563eabb9507015acff010977a89ae087df9b828b80bc9352ed44c98faeaf4c8d884ffa14176bfa28772dc9872ad8b5d401aff8b834c728e5f65 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3 DIST raxml-8.2.13.tar.gz 10201721 BLAKE2B ee48dc599947619d12a54cafef1eee554abc0df30a31ba2fdb501b228dadec9f137acff8f472047f4686304f74d27893696c95ff808baa128c2c3d83539366a1 SHA512 c99dc3f8c8798cda38c644501f474c0261e72c1f3b64d594d5006fa03e8d8c4da3bdf20b8e3c6c9f669c9509d5af27a0c286a2570a54c8ff7df7cd63c1f78885 diff --git a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch b/sci-biology/raxml/files/raxml-7.2.6-makefile.patch deleted file mode 100644 index 6b82ed65b770..000000000000 --- a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch +++ /dev/null @@ -1,29 +0,0 @@ - Makefile.gcc | 6 +++--- - 1 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/Makefile.gcc b/Makefile.gcc -index 716b6c6..f0c1de2 100644 ---- a/Makefile.gcc -+++ b/Makefile.gcc -@@ -1,10 +1,10 @@ - # Makefile August 2006 by Alexandros Stamatakis - # Makefile cleanup October 2006, Courtesy of Peter Cordes <[email protected]> - --CC = gcc -+CC ?= gcc - - --CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -+CPPFLAGS += -D_GNU_SOURCE - - - -@@ -19,7 +19,7 @@ all : raxmlHPC - GLOBAL_DEPS = axml.h globalVariables.h - - raxmlHPC : $(objs) -- $(CC) -o raxmlHPC $(objs) $(LIBRARIES) -+ $(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES) $(LIBS) - - classify.o : classify.c $(GLOBAL_DEPS) - evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS) diff --git a/sci-biology/raxml/raxml-7.2.6.ebuild b/sci-biology/raxml/raxml-7.2.6.ebuild deleted file mode 100644 index adb044426381..000000000000 --- a/sci-biology/raxml/raxml-7.2.6.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit flag-o-matic toolchain-funcs - -DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees" -HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"; -SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"; -S="${WORKDIR}/RAxML-${PV}" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="cpu_flags_x86_sse3 +threads" -REQUIRED_USE="cpu_flags_x86_sse3" - -# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS -PATCHES=( "${FILESDIR}"/${P}-makefile.patch ) - -src_configure() { - use cpu_flags_x86_sse3 && append-cppflags -D__SIM_SSE3 - use threads && \ - append-cppflags -D_USE_PTHREADS && \ - append-libs -pthread - - tc-export CC -} - -src_compile() { - emake -f Makefile.gcc -} - -src_install() { - dobin raxmlHPC -}
