commit: d0ac14a4ebe0f4b791bc057df61ffb1606dac57b
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Fri May 24 19:07:30 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Fri May 24 19:32:09 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d0ac14a4
dev-python/scipy: Bump to 1.13.1
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/scipy/Manifest | 2 +
dev-python/scipy/scipy-1.13.1.ebuild | 166 +++++++++++++++++++++++++++++++++++
2 files changed, 168 insertions(+)
diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index e85df05734f7..308e1728a20c 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -2,6 +2,8 @@ DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B
2b35c24522b2bd498b4ebe84a854c8ec1e6291
DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B
a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031
SHA512
2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb
DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B
03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64
SHA512
376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7
DIST scipy-1.13.0.tar.gz 57204550 BLAKE2B
cfbb4e76efae952854e9ff4ed254e9819b58d224906e1ded3c6a914b1e28b5fad15f8bbbb4a9c413969d6e4b1faf4e0038a36729171ff06e640b241a9dd4af94
SHA512
9bd6fd3f76742a07e5bb003edf4c0e3a82edf749077502fbce3d16fe595d455846edcf57db12ec0a9d4792803e974355362d919047414badfcaededf1e4343f7
+DIST scipy-1.13.1.tar.gz 57210720 BLAKE2B
d58d673de9b8d6239a3de285982d65ba1baf0ca8b623276c19b85b1f4bb83c56e66c32d7a22d1d602435cfa086b5d56167cac55bdda608590aaddf677844f060
SHA512
28aafdbcae7229a3d11f192683b703cb485d45e4d90413d6564df3d9005bc8fd4df8bd92caffe657666828cd7253e7e0363c0948c74a1b8f3f3b7d4f4cfd9b36
DIST scipy-html-1.11.0.zip 50421508 BLAKE2B
cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065
SHA512
33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253
DIST scipy-html-1.11.2.zip 50435722 BLAKE2B
460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5
SHA512
986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797
DIST scipy-html-1.13.0.zip 65327245 BLAKE2B
5e5ffbf4ff4a28c5a003da0e5170ef5eef1b430ecca0284a89aed5f96f7afc549db001beb2e56b3debbd3527c57b773b25c35579b32d8a6d8e5e97a75db4d38b
SHA512
792c32f077d76d47e42d02c5047990a6afdcdc9c31dcc7e9987e7a5aa62c56aec44dcf7d14e3f94ae59f8fb718ce89a2835b87d2aef7a16ce9a534361b7329d7
+DIST scipy-html-1.13.1.zip 65288062 BLAKE2B
4eea1277870fcc0070d543139ef8b786d3c6841835601eb5447fed042d03035edfb556f824ccbf9946f1efa41da75372df1dd3789d045bdbaea7e156010bb8e6
SHA512
fc70eb7fa3763e40f2389ad31e1a78fcd2aa1b3db40927f57a583692143001c8b6a8f3f0ddea47eaf62adb30d1207765d8887a2a53baa1b8ed706b7fb348bbbf
diff --git a/dev-python/scipy/scipy-1.13.1.ebuild
b/dev-python/scipy/scipy-1.13.1.ebuild
new file mode 100644
index 000000000000..0f7cff9b94e5
--- /dev/null
+++ b/dev-python/scipy/scipy-1.13.1.ebuild
@@ -0,0 +1,166 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( pypy3 python3_{10..12} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit fortran-2 distutils-r1
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+ https://scipy.org/
+ https://github.com/scipy/scipy/
+ https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+ inherit git-r3
+
+ # Need submodules, so git for now.
+ EGIT_REPO_URI="https://github.com/scipy/scipy";
+ EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+ EGIT_SUBMODULES=( '*' )
+else
+ inherit pypi
+
+ # Upstream is often behind with doc updates
+ DOC_PV=${PV}
+
+ SRC_URI+="
+ doc? (
+
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+ )"
+
+ if [[ ${PV} != *rc* ]] ; then
+ KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390
~sparc ~x86"
+ fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +fortran test-rust"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+ >=dev-python/numpy-1.22.4:=[lapack,${PYTHON_USEDEP}]
+ sci-libs/arpack:=
+ sci-libs/umfpack
+ virtual/cblas
+ >=virtual/lapack-3.8
+"
+RDEPEND="
+ ${DEPEND}
+ dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ dev-lang/swig
+ >=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
+ >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
+ >=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
+ >=dev-build/meson-1.1.0
+ !kernel_Darwin? ( dev-util/patchelf )
+ virtual/pkgconfig
+ doc? ( app-arch/unzip )
+ fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
+ test? (
+ >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
+ )
+ test-rust? (
+ dev-python/pooch[${PYTHON_USEDEP}]
+ )
+"
+
+EPYTEST_XDIST=1
+distutils_enable_tests pytest
+
+src_unpack() {
+ default
+
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+ fi
+}
+
+python_configure_all() {
+ DISTUTILS_ARGS=(
+ -Dblas=blas
+ -Dlapack=lapack
+ -Duse-pythran=$(usex fortran true false)
+ )
+
+ # hide real scipy, to prevent pythran crashing when scipy is being
+ # rebuilt for new numpy ABI
+ # https://github.com/serge-sans-paille/pythran/issues/2194
+ cat >> "${T}/scipy.py" <<-EOF || die
+ raise ImportError("hide real scipy")
+ EOF
+}
+
+python_compile() {
+ local -x PYTHONPATH="${T}${PYTHONPATH+:${PYTHONPATH}}"
+ distutils-r1_python_compile
+}
+
+python_test() {
+ cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+
+ local EPYTEST_DESELECT=(
+ # Network
+
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
+ scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
+ scipy/datasets/tests/test_data.py::TestDatasets::test_face
+
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
+
+ # Precision issue with diff. blas?
+
scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
+
+ # Crashes with assertion, not a regression
+ # https://github.com/scipy/scipy/issues/19321
+ scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
+
+ # timeouts
+ scipy/sparse/linalg/tests/test_propack.py::test_examples
+ # hang or incredibly slow
+
scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
+
scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
+
+ # TODO
+
scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
+ )
+ local EPYTEST_IGNORE=()
+
+ if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
+ EPYTEST_IGNORE+=(
+ scipy/datasets/tests/test_data.py
+ )
+ fi
+
+ case ${EPYTHON} in
+ pypy3)
+ EPYTEST_DESELECT+=(
+ # fd leaks in tests
+ # https://github.com/scipy/scipy/issues/19553
+
scipy/fft/_pocketfft/tests/test_real_transforms.py
+ # TODO
+
'scipy/special/tests/test_data.py::test_boost[<Data for expi:
expinti_data_long_ipp-expinti_data_long>]'
+ # missing dict.__ror__
+ # https://github.com/pypy/pypy/issues/4934
+
'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
+ )
+ ;;
+ esac
+
+ local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+ epytest scipy
+}
+
+python_install_all() {
+ use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+ distutils-r1_python_install_all
+}
