commit: 3cb5d98f7cae04d088d813673f7942553d26ee45 Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org> AuthorDate: Wed Jun 12 06:19:48 2024 +0000 Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org> CommitDate: Wed Jun 12 06:22:12 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3cb5d98f
sci-libs/cifparse-obj: treeclean Closes: https://bugs.gentoo.org/931861 Bug: https://bugs.gentoo.org/646346 Bug: https://bugs.gentoo.org/685552 Bug: https://bugs.gentoo.org/725426 Bug: https://bugs.gentoo.org/731896 Bug: https://bugs.gentoo.org/751550 Bug: https://bugs.gentoo.org/799620 Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org> profiles/package.mask | 5 - sci-libs/cifparse-obj/Manifest | 1 - sci-libs/cifparse-obj/cifparse-obj-7.105.ebuild | 54 ---------- .../files/cifparse-obj-7.025-gcc5_6.patch | 16 --- .../files/cifparse-obj-7.105-makefile.patch | 110 --------------------- sci-libs/cifparse-obj/metadata.xml | 8 -- 6 files changed, 194 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 0cde601d5086..399032e9ade9 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -440,11 +440,6 @@ app-emulation/docker-machine-kvm # Removal: 2024-06-12. Bugs #931874, #878771. media-gfx/raw-thumbnailer -# Arthur Zamarin <[email protected]> (2024-05-13) -# EAPI=6, fails to compile, library with no reverse dependencies. -# Removal: 2024-06-12. Bug #931861. -sci-libs/cifparse-obj - # Sam James <[email protected]> (2024-04-28) # Masked for testing. Tracker bug: bug #930805. >=sys-libs/ncurses-6.5 diff --git a/sci-libs/cifparse-obj/Manifest b/sci-libs/cifparse-obj/Manifest deleted file mode 100644 index b4e1510dc6e6..000000000000 --- a/sci-libs/cifparse-obj/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST cifparse-obj-v7.105-prod-src.tar.gz 931151 BLAKE2B c362fc528e0c88b41ef8433c6d0235ae0bd4055c8c1704d2f1be8ba8aa27a7526b3d19172f2a4ffda79c323140a54dcb2b0a2eb78f30780473c9bcfb2ab6c6f9 SHA512 d626aa055bdd6762eda4b5b04121f37fff3bc09460b12cd6cb80566545d23e5c08a8ad54fa184076932d2cff38aa9d91fa659fbe9a70d4a07b8b1677c28549f4 diff --git a/sci-libs/cifparse-obj/cifparse-obj-7.105.ebuild b/sci-libs/cifparse-obj/cifparse-obj-7.105.ebuild deleted file mode 100644 index 84c808a677e9..000000000000 --- a/sci-libs/cifparse-obj/cifparse-obj-7.105.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit toolchain-funcs - -MY_P="${PN}-v${PV}-prod-src" - -DESCRIPTION="Provides an object-oriented application interface to information in mmCIF format" -HOMEPAGE="http://sw-tools.pdb.org/apps/CIFPARSE-OBJ/index.html"; -SRC_URI="http://sw-tools.pdb.org/apps/CIFPARSE-OBJ/source/${MY_P}.tar.gz"; - -LICENSE="PDB" -SLOT="0" -KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="" - -RDEPEND="" -DEPEND=" - app-alternatives/yacc - app-alternatives/lex" - -S="${WORKDIR}/${MY_P}" - -PATCHES=( - "${FILESDIR}"/${P}-makefile.patch - "${FILESDIR}"/${PN}-7.025-gcc5_6.patch -) - -src_prepare() { - default - - sed \ - -e "s:^\(CC=\).*:\1$(tc-getCC):g" \ - -e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \ - -e "s:^\(F77=\).*:\1${FORTRANC}:g" \ - -e "s:^\(F77_LINKER=\).*:\1${FORTRANC}:g" \ - -e "s:-static::g" \ - -i "${S}"/etc/make.* || die "Failed to fix makefile" -} - -src_compile() { - # parallel make fails - emake -j1 \ - C_OPT="${CFLAGS}" \ - CXX_OPT="${CXXFLAGS}" -} - -src_install() { - dolib.a lib/* - insinto /usr/include/${PN} - doins include/* -} diff --git a/sci-libs/cifparse-obj/files/cifparse-obj-7.025-gcc5_6.patch b/sci-libs/cifparse-obj/files/cifparse-obj-7.025-gcc5_6.patch deleted file mode 100644 index 2ac0ec220d9e..000000000000 --- a/sci-libs/cifparse-obj/files/cifparse-obj-7.025-gcc5_6.patch +++ /dev/null @@ -1,16 +0,0 @@ - etc/platform.sh | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/etc/platform.sh b/etc/platform.sh -index ff0ab51..1b56ab1 100755 ---- a/etc/platform.sh -+++ b/etc/platform.sh -@@ -60,7 +60,7 @@ case `uname -s` in - # Check if it is a Linux platform - Linux) - # Check if it is GCC version 4.x -- gcc_ver=`gcc --version | grep -e " 4\."` -+ gcc_ver=`gcc --version | grep -e " [456]\."` - if [[ -z $gcc_ver ]] - then - # It is not GCC version 4.x. Check if it is GCC version 3.x diff --git a/sci-libs/cifparse-obj/files/cifparse-obj-7.105-makefile.patch b/sci-libs/cifparse-obj/files/cifparse-obj-7.105-makefile.patch deleted file mode 100644 index 1716cd6390a4..000000000000 --- a/sci-libs/cifparse-obj/files/cifparse-obj-7.105-makefile.patch +++ /dev/null @@ -1,110 +0,0 @@ - etc/make.platform.gnu3 | 14 +++++++------- - etc/make.platform.gnu4 | 16 ++++++++-------- - 2 files changed, 15 insertions(+), 15 deletions(-) - -diff --git a/etc/make.platform.gnu3 b/etc/make.platform.gnu3 -index 54b0297..138fa47 100644 ---- a/etc/make.platform.gnu3 -+++ b/etc/make.platform.gnu3 -@@ -107,8 +107,8 @@ NON_ANSI_C_FLAG= - C_WARNINGS=$(WARNINGS) - - # C compiler flags --CFLAGS=$(OPT) $(ABI) $(PIC) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) --CFLAGS_NONANSI=$(OPT) $(ABI) $(PIC) $(NON_ANSI_C_FLAG) $(C_WARNINGS) \ -+CFLAGS=$(C_OPT) $(ABI) $(PIC) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) -+CFLAGS_NONANSI=$(C_OPT) $(ABI) $(PIC) $(NON_ANSI_C_FLAG) $(C_WARNINGS) \ - $(DEFINES) $(INCLUDES) - - ## C++ compiler -@@ -128,14 +128,14 @@ C_PLUS_WARNINGS=$(WARNINGS) $(NO_DEPRECATED) - EXT=C - - # C++ compiler flags --C++FLAGS=$(OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ -+C++FLAGS=$(CXX_OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ - $(DEFINES) $(INCLUDES) --C++FLAGS_NONANSI=$(OPT) $(ABI) $(PIC) $(NON_ANSI_C_PLUS_FLAG) \ -+C++FLAGS_NONANSI=$(CXX_OPT) $(ABI) $(PIC) $(NON_ANSI_C_PLUS_FLAG) \ - $(C_PLUS_WARNINGS) $(DEFINES) $(INCLUDES) - - # C++FLAGS_RELAXED should be set to avoid warnings reported by third party - # source code that is not maintained by PDB --C++FLAGS_RELAXED=$(OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(NO_DEPRECATED) \ -+C++FLAGS_RELAXED=$(CXX_OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(NO_DEPRECATED) \ - $(DEFINES) $(INCLUDES) - - ## Fortran compiler -@@ -145,7 +145,7 @@ C++FLAGS_RELAXED=$(OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(NO_DEPRECATED) \ - F77=f77 - - # Fortran compiler flags --FFLAGS=-O -u -+FFLAGS=$(F_OPT) - - # Additional Fortran libraries - F77LIBS= -@@ -158,7 +158,7 @@ F77LIBS= - STATIC_LINKING=-static - - # Linker flags --LDFLAGS=$(ABI) -w $(STATIC_LINKING) -+LDFLAGS=$(ABI) -w $(STATIC_LINKING) $(LD_OPT) - LDFLAGS_NO_STATIC=$(ABI) -w - - # Fortran linker -diff --git a/etc/make.platform.gnu4 b/etc/make.platform.gnu4 -index 6676f35..51681fa 100644 ---- a/etc/make.platform.gnu4 -+++ b/etc/make.platform.gnu4 -@@ -107,11 +107,11 @@ NON_ANSI_C_FLAG= - C_WARNINGS=$(WARNINGS) - - # C compiler flags --CFLAGS=$(OPT) $(ABI) $(PIC) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) --CFLAGS_NONANSI=$(OPT) $(ABI) $(PIC) $(NON_ANSI_C_FLAG) $(DEFINES) $(INCLUDES) -+CFLAGS=$(C_OPT) $(ABI) $(PIC) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) -+CFLAGS_NONANSI=$(C_OPT) $(ABI) $(PIC) $(NON_ANSI_C_FLAG) $(DEFINES) $(INCLUDES) - - ## C++ compiler --## This part defines C++ compiler information -+ - - # C++ compiler executable - CCC=g++ -@@ -127,14 +127,14 @@ C_PLUS_WARNINGS=$(WARNINGS) $(NO_DEPRECATED) - EXT=C - - # C++ compiler flags --C++FLAGS=$(OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ -+C++FLAGS=$(CXX_OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ - $(DEFINES) $(INCLUDES) --C++FLAGS_NONANSI=$(OPT) $(ABI) $(PIC) $(NON_ANSI_C_PLUS_FLAG) \ -+C++FLAGS_NONANSI=$(CXX_OPT) $(ABI) $(PIC) $(NON_ANSI_C_PLUS_FLAG) \ - $(C_PLUS_WARNINGS) $(DEFINES) $(INCLUDES) - - # C++FLAGS_RELAXED should be set to avoid warnings reported by third party - # source code that is not maintained by PDB --C++FLAGS_RELAXED=$(OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(NO_DEPRECATED) \ -+C++FLAGS_RELAXED=$(CXX_OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(NO_DEPRECATED) \ - $(DEFINES) $(INCLUDES) - - ## Fortran compiler -@@ -144,7 +144,7 @@ C++FLAGS_RELAXED=$(OPT) $(ABI) $(PIC) $(ANSI_C_PLUS_FLAG) $(NO_DEPRECATED) \ - F77=f77 - - # Fortran compiler flags --FFLAGS=-O -u -+FFLAGS=$(F_OPT) - - # Additional Fortran libraries - F77LIBS= -@@ -157,7 +157,7 @@ F77LIBS= - STATIC_LINKING=-static - - # Linker flags --LDFLAGS=$(ABI) -w $(STATIC_LINKING) -+LDFLAGS=$(ABI) -w $(STATIC_LINKING) $(LD_OPT) - LDFLAGS_NO_STATIC=$(ABI) -w - - # Fortran linker diff --git a/sci-libs/cifparse-obj/metadata.xml b/sci-libs/cifparse-obj/metadata.xml deleted file mode 100644 index e490bcb8aa87..000000000000 --- a/sci-libs/cifparse-obj/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata>
