commit: 90f56a3352545c23a9fdb86b515aa6ce1d5e26b0
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 19 12:47:59 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Jun 19 13:14:33 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=90f56a33
dev-python/scikit-image: Bump to 0.24.0
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/scikit-image/Manifest | 1 +
dev-python/scikit-image/scikit-image-0.24.0.ebuild | 96 ++++++++++++++++++++++
2 files changed, 97 insertions(+)
diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 881eab142ed9..640af69cc674 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,2 +1,3 @@
DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2
143900901 BLAKE2B
c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb
SHA512
d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
DIST scikit_image-0.23.2.tar.gz 22678261 BLAKE2B
11c44676e9f7bce7735e85d8416175a55b1808807b99597d60495dc2b0c961a05a514b5ec456665a25d31cc09a20e430c331cfd5bc10afa01ca4070722aa03f8
SHA512
8abf6c2bb92a75524d254265822cdc49db636a482efe0d6459fc113f6898bc5c19ad58905a5020a9c4262f55993ad2e8d13810023c62d06c5ee9854666f5337f
+DIST scikit_image-0.24.0.tar.gz 22693928 BLAKE2B
f165f702908fe446b459de3db0ec056a4b79d7266f85bc81c991569c1e492c22d238e8553d8f035abd83d4d3c4b449304e74b55d8bf558cac977c3ea5f0c864a
SHA512
becb062725b4c1f64e12a1f775175e48dbce1b989c1e8f40ec04ff79cb926740be514b9a0a68e3f9e17fb0d3c7b860c7451b91eb178bbae93521e02e3e8e92db
diff --git a/dev-python/scikit-image/scikit-image-0.24.0.ebuild
b/dev-python/scikit-image/scikit-image-0.24.0.ebuild
new file mode 100644
index 000000000000..2ec63290c17b
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.24.0.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+ https://scikit-image.org/
+ https://github.com/scikit-image/scikit-image/
+ https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+ test? (
+
https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+ )
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+ >=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+ >=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+ >=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+ >=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+ >=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+ >=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+ >=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ test? (
+ dev-python/pytest-localserver[${PYTHON_USEDEP}]
+ )
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+ # for some reason, upstream refetches data that's already in the tarball
+ # sigh
+ mkdir -p "${HOME}/.cache/scikit-image" || die
+ mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+ # This is a true horror, sigh
+ local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+ pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+ cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+ Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+ brain.tiff cells3d.tif eagle.png \
+ "${cache_dir}/" || die
+ cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG
"${cache_dir}"/skin.jpg || die
+ cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif
|| die
+ cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif
|| die
+ cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+ cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+ cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+ popd > /dev/null || die
+
+ distutils-r1_src_test
+}
+
+python_test() {
+ local EPYTEST_DESELECT=(
+ # tests for downloading all data files, including these not
needed
+ # by any actual tests
+ data/tests/test_data.py::test_download_all_with_pooch
+ )
+
+ local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+ epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+ optfeature "FITS io capability" dev-python/astropy
+ optfeature "GTK" dev-python/pygtk
+ optfeature "io plugin providing most standard formats" dev-python/imread
+ optfeature "plotting" dev-python/matplotlib
+ optfeature "wavelet transformations" dev-python/pywavelets
+ optfeature "io plugin providing a wide variety of formats, including
specialized formats using in medical imaging." dev-python/simpleitk
+}
