jsbronder 15/02/17 01:17:42 Modified: metadata.xml ChangeLog Added: openmpi-1.8.4-r2.ebuild Log: Add numa USE flag. As xarthisius points out, this is probably desireable as it allows locking processes to CPUs. (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 4D7043C9)
Revision Changes Path 1.16 sys-cluster/openmpi/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/metadata.xml?rev=1.16&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/metadata.xml?rev=1.16&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/metadata.xml?r1=1.15&r2=1.16 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/metadata.xml,v retrieving revision 1.15 retrieving revision 1.16 diff -u -r1.15 -r1.16 --- metadata.xml 8 Apr 2014 09:45:34 -0000 1.15 +++ metadata.xml 17 Feb 2015 01:17:41 -0000 1.16 @@ -12,6 +12,7 @@ platform support</flag> <flag name='romio'>Build the ROMIO MPI-IO component</flag> <flag name='mpi-threads'>Enable MPI_THREAD_MULTIPLE</flag> + <flag name='numa'>Enable numactl to allow binding processes to CPUs</flag> <flag name='vt'>Enable bundled VampirTrace support</flag> <flag name="pbs">Add support for the Portable Batch System (PBS)</flag> </use> 1.131 sys-cluster/openmpi/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/ChangeLog?rev=1.131&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/ChangeLog?rev=1.131&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/ChangeLog?r1=1.130&r2=1.131 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/ChangeLog,v retrieving revision 1.130 retrieving revision 1.131 diff -u -r1.130 -r1.131 --- ChangeLog 4 Feb 2015 21:46:32 -0000 1.130 +++ ChangeLog 17 Feb 2015 01:17:41 -0000 1.131 @@ -1,6 +1,13 @@ # ChangeLog for sys-cluster/openmpi # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/ChangeLog,v 1.130 2015/02/04 21:46:32 jsbronder Exp $ +# $Header: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/ChangeLog,v 1.131 2015/02/17 01:17:41 jsbronder Exp $ + +*openmpi-1.8.4-r2 (17 Feb 2015) + + 17 Feb 2015; Justin Bronder <[email protected]> +openmpi-1.8.4-r2.ebuild, + metadata.xml: + Add numa USE flag. As xarthisius points out, this is probably desireable as + it allows locking processes to CPUs. *openmpi-1.8.4-r1 (04 Feb 2015) *openmpi-1.8.3-r1 (04 Feb 2015) 1.1 sys-cluster/openmpi/openmpi-1.8.4-r2.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/openmpi-1.8.4-r2.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-cluster/openmpi/openmpi-1.8.4-r2.ebuild?rev=1.1&content-type=text/plain Index: openmpi-1.8.4-r2.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/openmpi-1.8.4-r2.ebuild,v 1.1 2015/02/17 01:17:41 jsbronder Exp $ EAPI=5 FORTRAN_NEEDED=fortran inherit autotools cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator MY_P=${P/-mpi} S=${WORKDIR}/${MY_P} IUSE_OPENMPI_FABRICS=" openmpi_fabrics_ofed openmpi_fabrics_knem openmpi_fabrics_open-mx openmpi_fabrics_psm" IUSE_OPENMPI_RM=" openmpi_rm_pbs openmpi_rm_slurm" IUSE_OPENMPI_OFED_FEATURES=" openmpi_ofed_features_control-hdr-padding openmpi_ofed_features_connectx-xrc openmpi_ofed_features_udcm openmpi_ofed_features_rdmacm openmpi_ofed_features_dynamic-sl openmpi_ofed_features_failover" DESCRIPTION="A high-performance message passing library (MPI)" HOMEPAGE="http://www.open-mpi.org"; SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads numa romio threads vt ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) openmpi_rm_pbs? ( !openmpi_rm_slurm ) openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" MPI_UNCLASSED_DEP_STR=" vt? ( !dev-libs/libotf !app-text/lcdf-typetools )" RDEPEND=" !sys-cluster/mpich !sys-cluster/mpich2 !sys-cluster/mpiexec dev-libs/libevent dev-libs/libltdl:0 >=sys-apps/hwloc-1.9.1[numa?] sys-libs/zlib cuda? ( dev-util/nvidia-cuda-toolkit ) elibc_FreeBSD? ( dev-libs/libexecinfo ) openmpi_fabrics_ofed? ( sys-infiniband/ofed ) openmpi_fabrics_knem? ( sys-cluster/knem ) openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm ) openmpi_rm_pbs? ( sys-cluster/torque ) openmpi_rm_slurm? ( sys-cluster/slurm ) openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm ) " DEPEND="${RDEPEND}" pkg_setup() { fortran-2_pkg_setup if use mpi-threads; then echo ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" ewarn "default and officially unsupported by upstream." ewarn "You may stop now and set USE=-mpi-threads" echo fi echo elog "OpenMPI has an overwhelming count of configuration options." elog "Don't forget the EXTRA_ECONF environment variable can let you" elog "specify configure options if you find them necessary." echo } src_prepare() { # Necessary for scalibility, see # http://www.open-mpi.org/community/lists/users/2008/09/6514.php if use threads; then echo 'oob_tcp_listen_mode = listen_thread' \ >> opal/etc/openmpi-mca-params.conf fi # https://github.com/open-mpi/ompi/issues/163 epatch "${FILESDIR}"/openmpi-ltdl.patch AT_M4DIR=config eautoreconf } src_configure() { local myconf=( --sysconfdir="${EPREFIX}/etc/${PN}" --enable-pretty-print-stacktrace --enable-orterun-prefix-by-default --with-hwloc="${EPREFIX}/usr" --with-libltdl=external ) if use mpi-threads; then myconf+=(--enable-mpi-threads --enable-opal-multi-threads) fi if use fortran; then myconf+=(--enable-mpi-fortran=all) else myconf+=(--enable-mpi-fortran=no) fi ! use vt && myconf+=(--enable-contrib-no-build=vt) econf "${myconf[@]}" \ $(use_enable cxx mpi-cxx) \ $(use_with cma) \ $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ $(use_enable romio io-romio) \ $(use_enable heterogeneous) \ $(use_enable ipv6) \ $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ $(use_enable openmpi_ofed_features_udcm openib-udcm) \ $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ $(use_with openmpi_rm_pbs tm) \ $(use_with openmpi_rm_slurm slurm) } src_install () { emake DESTDIR="${D}" install # From USE=vt see #359917 rm "${ED}"/usr/share/libtool &> /dev/null # Avoid collisions with libevent rm -rf "${ED}"/usr/include/event2 &> /dev/null # Remove la files, no static libs are installed and we have pkg-config find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete dodoc README AUTHORS NEWS VERSION || die } src_test() { # Doesn't work with the default src_test as the dry run (-n) fails. emake -j1 check }
