commit: 727c14502c0538299f148865d6a39c053fb56da1
Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Tue Jul 16 12:13:03 2024 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Fri Jul 19 12:35:03 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=727c1450
dev-python/pyfaidx: version bump 0.8.1.1
Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
{sci-biology => dev-python}/pyfaidx/metadata.xml | 4 ----
dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild | 25 ++++++++++++++++++++++++
profiles/updates/2Q-2024 | 1 +
sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild | 22 ---------------------
sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild | 24 -----------------------
5 files changed, 26 insertions(+), 50 deletions(-)
diff --git a/sci-biology/pyfaidx/metadata.xml b/dev-python/pyfaidx/metadata.xml
similarity index 75%
rename from sci-biology/pyfaidx/metadata.xml
rename to dev-python/pyfaidx/metadata.xml
index 47cc39d79..b0e39cc41 100644
--- a/sci-biology/pyfaidx/metadata.xml
+++ b/dev-python/pyfaidx/metadata.xml
@@ -5,10 +5,6 @@
<email>[email protected]</email>
<name>Michael Schubert</name>
</maintainer>
- <maintainer type="project">
- <email>[email protected]</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
<upstream>
<remote-id type="pypi">pyfaidx</remote-id>
<remote-id type="github">mdshw5/pyfaidx</remote-id>
diff --git a/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild
b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild
new file mode 100644
index 000000000..86465aecd
--- /dev/null
+++ b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="Efficient pythonic random access to fasta subsequences"
+HOMEPAGE="https://github.com/mdshw5/pyfaidx";
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+REPEND="dev-python/importlib_metadata[${PYTHON_USEDEP}]"
+
+EPYTEST_DESELECT=(
+ # needs external file
+ tests/test_Fasta_bgzip.py
+)
+
+distutils_enable_tests pytest
diff --git a/profiles/updates/2Q-2024 b/profiles/updates/2Q-2024
new file mode 100644
index 000000000..bf7fb5174
--- /dev/null
+++ b/profiles/updates/2Q-2024
@@ -0,0 +1 @@
+move sci-biology/pyfaidx dev-python/pyfaidx
diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
deleted file mode 100644
index bec223f6c..000000000
--- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx
https://github.com/mdshw5/pyfaidx";
-SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz ->
${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-REPEND="dev-python/six[${PYTHON_USEDEP}]"
-
-#distutils_enable_tests nose
diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
deleted file mode 100644
index 14f557869..000000000
--- a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-
-inherit distutils-r1 pypi
-
-DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx
https://github.com/mdshw5/pyfaidx";
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-# Test issues reported upstream:
-# https://github.com/mdshw5/pyfaidx/issues/208
-RESTRICT="test"
-
-REPEND="dev-python/six[${PYTHON_USEDEP}]"
-
-distutils_enable_tests pytest
