commit: 9c85c1adefb4efcc33cf1aea83a737a5608013f2
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Aug 21 09:38:10 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Aug 21 15:06:17 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9c85c1ad
dev-python/scipy: Bump to 1.14.1
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/scipy/Manifest | 1 +
dev-python/scipy/scipy-1.14.1.ebuild | 161 +++++++++++++++++++++++++++++++++++
2 files changed, 162 insertions(+)
diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index 1e6b60d8065c..6416455905f3 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,2 +1,3 @@
DIST scipy-1.14.0.tar.gz 58618870 BLAKE2B
bf9ed05628b02dc058555402995caae722cf6802bde80387d4e4477ec533589a66ca70b5dd44a32ddac652c7c69300406434b80e7cbc9aee2a78ae6b26ee4c2b
SHA512
6579d988a2093602f5fc82203bbb5dc5690a95032484b5d5bd843d1e7995b3b89d802c7b38ec0345c1f3d8e22c98fb92b3982a1eadfcdf63607f929a52b56abf
+DIST scipy-1.14.1.tar.gz 58620554 BLAKE2B
5cb383648a5f3b8d0d321efcd66992212c59ce3fc3dbf812a2fa97c09cb18831b280af6c7689553644f83c531a266e9152e2a139a12aed08307e1ed64deea78e
SHA512
20e3cf13590f76dfdc40ca8f90e6d5a68502e74415f37fa24fdb8169098e1d7f0aa631ae742c8c3e9573fa7d63da61986d51f35f090a3785873ae0761f7fcfa6
DIST scipy-html-1.14.0.zip 65723829 BLAKE2B
ba47dbf00a5d2a53a9addc5ea68ab18b42f211a018b89aa4b0b57ff0dee02e410a3effc59ddf8fbbc5aa33075d45d86880aed3a14068da5bd7b62ee526199967
SHA512
93be0bafcc64cea1ba130bbcc77c0741acc4f819c84a5030391a22657a1bc63abe8434a2723f66b7ad04c0809dc6d02e3a97ffb8d94bd3d4a4bb759ee796b475
diff --git a/dev-python/scipy/scipy-1.14.1.ebuild
b/dev-python/scipy/scipy-1.14.1.ebuild
new file mode 100644
index 000000000000..14c9d3332cc5
--- /dev/null
+++ b/dev-python/scipy/scipy-1.14.1.ebuild
@@ -0,0 +1,161 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( pypy3 python3_{10..13} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit flag-o-matic fortran-2 distutils-r1
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+ https://scipy.org/
+ https://github.com/scipy/scipy/
+ https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+ inherit git-r3
+
+ # Need submodules, so git for now.
+ EGIT_REPO_URI="https://github.com/scipy/scipy";
+ EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+ EGIT_SUBMODULES=( '*' )
+else
+ inherit pypi
+
+ # Upstream is often behind with doc updates
+ DOC_PV=1.14.0
+
+ SRC_URI+="
+ doc? (
+
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+ )"
+
+ if [[ ${PV} != *rc* ]] ; then
+ KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390
~sparc ~x86"
+ fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +fortran test-rust"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+ >=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
+ sci-libs/arpack:=
+ sci-libs/umfpack
+ virtual/cblas
+ >=virtual/lapack-3.8
+"
+RDEPEND="
+ ${DEPEND}
+ dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ dev-lang/swig
+ >=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
+ >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
+ >=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
+ >=dev-build/meson-1.1.0
+ !kernel_Darwin? ( dev-util/patchelf )
+ virtual/pkgconfig
+ doc? ( app-arch/unzip )
+ fortran? (
+ >=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
+ )
+ test? (
+ >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
+ )
+ test-rust? (
+ dev-python/pooch[${PYTHON_USEDEP}]
+ )
+"
+
+EPYTEST_XDIST=1
+distutils_enable_tests pytest
+
+src_unpack() {
+ default
+
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+ fi
+}
+
+python_configure_all() {
+ DISTUTILS_ARGS=(
+ -Dblas=blas
+ -Dlapack=lapack
+ -Duse-pythran=$(usex fortran true false)
+ )
+
+ # https://bugs.gentoo.org/932721
+ has_version '>=dev-python/numpy-2.0.0' && filter-lto
+}
+
+python_test() {
+ cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+
+ local EPYTEST_DESELECT=(
+ # Network
+
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
+ scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
+ scipy/datasets/tests/test_data.py::TestDatasets::test_face
+
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
+
+ # Precision issue with diff. blas?
+
scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
+
+ # Crashes with assertion, not a regression
+ # https://github.com/scipy/scipy/issues/19321
+ scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
+
+ # timeouts
+ scipy/sparse/linalg/tests/test_propack.py::test_examples
+ # hang or incredibly slow
+
scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
+
scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
+
+ # TODO
+
scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
+ )
+ local EPYTEST_IGNORE=()
+
+ if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
+ EPYTEST_IGNORE+=(
+ scipy/datasets/tests/test_data.py
+ )
+ fi
+
+ case ${EPYTHON} in
+ pypy3)
+ EPYTEST_DESELECT+=(
+ # fd leaks in tests
+ # https://github.com/scipy/scipy/issues/19553
+
scipy/fft/_pocketfft/tests/test_real_transforms.py
+ # TODO
+
'scipy/special/tests/test_data.py::test_boost[<Data for expi:
expinti_data_long_ipp-expinti_data_long>]'
+ # missing dict.__ror__
+ # https://github.com/pypy/pypy/issues/4934
+
'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
+ # mismatched exception message
+
scipy/optimize/tests/test_hessian_update_strategy.py::TestHessianUpdateStrategy::test_initialize_catch_illegal
+ )
+ ;;
+ esac
+
+ local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+ epytest scipy
+}
+
+python_install_all() {
+ use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+ distutils-r1_python_install_all
+}
