commit: 7e1e46090ff9b7817cb28b62cbade16a7d58201d Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Wed Feb 18 13:15:20 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Wed Feb 18 13:15:20 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7e1e4609
sci-biology/cgview-bin: fix SLOT operators; drop KEYWORDS as fetch failed Package-Manager: portage-2.2.17 --- sci-biology/cgview-bin/ChangeLog | 5 +++- sci-biology/cgview-bin/cgview-bin-20131130.ebuild | 34 +++++++++++------------ 2 files changed, 21 insertions(+), 18 deletions(-) diff --git a/sci-biology/cgview-bin/ChangeLog b/sci-biology/cgview-bin/ChangeLog index d8d6b14..e3de215 100644 --- a/sci-biology/cgview-bin/ChangeLog +++ b/sci-biology/cgview-bin/ChangeLog @@ -1,7 +1,10 @@ # ChangeLog for sci-biology/cgview-bin -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 18 Feb 2015; Justin Lecher <[email protected]> cgview-bin-20131130.ebuild: + sci-biology/cgview-bin: fix SLOT operators; drop KEYWORDS as fetch failed + *cgview-bin-20131130 (23 Mar 2014) 23 Mar 2014; Martin Mokrejs <[email protected]> diff --git a/sci-biology/cgview-bin/cgview-bin-20131130.ebuild b/sci-biology/cgview-bin/cgview-bin-20131130.ebuild index be563a9..61141e3 100644 --- a/sci-biology/cgview-bin/cgview-bin-20131130.ebuild +++ b/sci-biology/cgview-bin/cgview-bin-20131130.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -6,39 +6,39 @@ EAPI=5 inherit java-pkg-2 -# download 134MB in size! DESCRIPTION="CGView Comparison Tool to compare genome sequences graphically (aka CCT)" HOMEPAGE="http://stothard.afns.ualberta.ca/downloads/CCT"; SRC_URI="http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip"; LICENSE="GPL-2" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="" IUSE="" -DEPEND=">=dev-lang/perl-5.8.8 - >=sci-biology/ncbi-tools-2.2.15 - >=virtual/jre-1.4.2 - dev-java/xerces - dev-java/batik - dev-java/commons-lang - >=media-gfx/imagemagick-6 - >=sci-biology/bioperl-1.4.0" +DEPEND=" + >=dev-lang/perl-5.8.8 + >=sci-biology/ncbi-tools-2.2.15 + >=virtual/jre-1.4.2:* + dev-java/xerces:2 + dev-java/batik + dev-java/commons-lang:2.1 + >=media-gfx/imagemagick-6 + >=sci-biology/bioperl-1.4.0" RDEPEND="${DEPEND}" S="${WORKDIR}"/cgview_comparison_tool +src_test(){ + ./update_cogs.sh || die + ./test.sh || die +} + src_install() { echo 'CCT_HOME='${EPREFIX}'/usr/share/cgview_comparison_tool' > "${S}/99cgview" echo 'PATH="$PATH":"'${CCT_HOME}'/scripts"' >> "${S}/99cgview" - doenvd "${S}/99cgview" || die + doenvd "${S}/99cgview" #export PATH="$PATH":"${CCT_HOME}/scripts":/path/to/blast-2.2.25/bin #export PERL5LIB="${CCT_HOME}"/lib/bioperl-1.2.3:"${CCT_HOME}"/lib/perl_modules:"$PERL5LIB" dobin bin/cgview.jar } - -src_test(){ - ./update_cogs.sh || die - ./test.sh || die -}
