commit: c921e9ffb851dcb6c90beb29502aff76d7436fd1 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Wed Feb 18 13:12:38 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Wed Feb 18 13:12:38 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c921e9ff
sci-biology/biopieces: fix SLOT operators; correct ruby and python deps Package-Manager: portage-2.2.17 --- sci-biology/biopieces/ChangeLog | 5 ++- sci-biology/biopieces/biopieces-9999.ebuild | 49 ++++++++++++++++------------- 2 files changed, 32 insertions(+), 22 deletions(-) diff --git a/sci-biology/biopieces/ChangeLog b/sci-biology/biopieces/ChangeLog index 3e269ec..db06e76 100644 --- a/sci-biology/biopieces/ChangeLog +++ b/sci-biology/biopieces/ChangeLog @@ -1,7 +1,10 @@ # ChangeLog for sci-biology/biopieces -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 18 Feb 2015; Justin Lecher <[email protected]> -Manifest, biopieces-9999.ebuild: + sci-biology/biopieces: fix SLOT operators; correct ruby and python deps + 13 Nov 2014; Justin Lecher <[email protected]> biopieces-0.51.ebuild, biopieces-9999.ebuild: Use perl virtuals instead of core diff --git a/sci-biology/biopieces/biopieces-9999.ebuild b/sci-biology/biopieces/biopieces-9999.ebuild index 6be82b8..d33a63f 100644 --- a/sci-biology/biopieces/biopieces-9999.ebuild +++ b/sci-biology/biopieces/biopieces-9999.ebuild @@ -1,51 +1,58 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ EAPI=5 -[ "$PV" == "9999" ] && inherit subversion +PYTHON_COMPAT=( python2_7 ) + +USE_RUBY="ruby19" -DESCRIPTION="Toolkit to find and trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" -HOMEPAGE="http://code.google.com/p/biopieces"; -SRC_URI="" if [ "$PV" == "9999" ]; then ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"; KEYWORDS="" + inherit subversion else - SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-"${PV}".sh"; + SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"; KEYWORDS="" fi +inherit ruby-fakegem python-single-r1 + +DESCRIPTION="Toolkit to find and trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" +HOMEPAGE="http://code.google.com/p/biopieces"; +SRC_URI="" + LICENSE="GPL-2" SLOT="0" IUSE="" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + # Ruby terminal-table ? -DEPEND=">=dev-lang/perl-5.8 +DEPEND=" + >=dev-lang/perl-5.8 + dev-perl/libwww-perl dev-perl/Bit-Vector - dev-perl/SVG - dev-perl/TermReadKey - virtual/perl-Time-HiRes - dev-perl/DBI - dev-perl/XML-Parser dev-perl/Carp-Clan dev-perl/Class-Inspector + dev-perl/DBD-mysql + dev-perl/DBI dev-perl/HTML-Parser - dev-perl/libwww-perl - dev-perl/SOAP-Lite - dev-perl/URI dev-perl/Inline dev-perl/Parse-RecDescent + dev-perl/SOAP-Lite + dev-perl/SVG + dev-perl/TermReadKey + dev-perl/URI + dev-perl/XML-Parser virtual/perl-version virtual/perl-DB_File - dev-perl/DBD-mysql - >=dev-lang/python-2.6 - dev-lang/ruby - dev-ruby/gnuplot - dev-ruby/narray - dev-ruby/RubyInline" + virtual/perl-Time-HiRes" + +ruby_add_bdepend "dev-ruby/RubyInline" +ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray" # sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict # sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict
