commit: ba04a1798863df111422eb2d4f6c8f3623aea67a
Author: Andrei Zavada <johnhommer <AT> gmail <DOT> com>
AuthorDate: Wed Feb 18 01:22:54 2015 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Wed Feb 18 01:22:54 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ba04a179
Merge branch 'master' of github.com:gentoo-science/sci
dev-libs/boost/ChangeLog | 17 +
dev-libs/boost/Manifest | 1 +
dev-libs/boost/boost-1.56.0-r2.ebuild | 398 +++++++++++++++++++++
.../files/boost-1.48.0-disable_icu_rpath.patch | 29 ++
.../boost-1.48.0-disable_libboost_python3.patch | 62 ++++
.../boost-1.48.0-no_strict_aliasing_python2.patch | 23 ++
.../boost/files/boost-1.48.0-python_linking.patch | 24 ++
.../boost-1.51.0-respect_python-buildid.patch | 69 ++++
...ost-1.51.0-support_dots_in_python-buildid.patch | 22 ++
dev-libs/boost/files/boost-1.52.0-threads.patch | 63 ++++
.../boost/files/boost-1.55.0-context-x32.patch | 42 +++
.../files/boost-1.55.0-tools-c98-compat.patch | 17 +
.../files/boost-1.56.0-build-auto_index-tool.patch | 13 +
dev-libs/boost/metadata.xml | 38 ++
sci-biology/HTSeq/ChangeLog | 12 +
sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 23 ++
sci-biology/HTSeq/Manifest | 1 +
sci-biology/{zmsort => HTSeq}/metadata.xml | 0
sci-biology/mip-scaffolder/ChangeLog | 12 +
sci-biology/mip-scaffolder/Manifest | 1 +
.../{zmsort => mip-scaffolder}/metadata.xml | 0
.../mip-scaffolder/mip-scaffolder-0.6.ebuild | 32 ++
sci-biology/transdecoder/ChangeLog | 4 +
.../transdecoder/transdecoder-20140704.ebuild | 2 +-
sci-chemistry/nwchem/ChangeLog | 8 +
sci-chemistry/nwchem/Manifest | 2 +
.../files/nwchem-6.5-icosahedron_zcoord.patch | 12 +
...26243-r5.ebuild => nwchem-6.5_p26243-r6.ebuild} | 7 +-
sci-libs/fftw/ChangeLog | 5 +
sci-libs/fftw/Manifest | 1 +
.../{fftw-9999.ebuild => fftw-3.3.4-r1.ebuild} | 54 +--
sys-apps/hwloc/ChangeLog | 230 ++++++++++++
sys-apps/hwloc/Manifest | 1 +
sys-apps/hwloc/files/hwloc-1.8.1-gl.patch | 11 +
sys-apps/hwloc/hwloc-1.10.1.ebuild | 69 ++++
sys-apps/hwloc/metadata.xml | 21 ++
sys-cluster/mpich/ChangeLog | 8 +-
sys-cluster/mpich/Manifest | 1 +
.../{mpich-3.0.4.ebuild => mpich-3.1.3-r1.ebuild} | 67 ++--
sys-cluster/mpich2/ChangeLog | 8 +-
.../{mpich2-1.5.ebuild => mpich2-1.5-r1.ebuild} | 75 ++--
sys-cluster/openmpi/ChangeLog | 11 +-
sys-cluster/openmpi/Manifest | 1 +
sys-cluster/openmpi/files/openmpi-ltdl.patch | 78 ++++
...penmpi-1.8.3.ebuild => openmpi-1.8.4-r2.ebuild} | 96 ++---
sys-process/numactl/ChangeLog | 10 +
sys-process/numactl/Manifest | 1 +
.../numactl/files/numactl-2.0.8-cpuid-pic.patch | 17 +
.../jrosetta => sys-process/numactl}/metadata.xml | 2 +-
sys-process/numactl/numactl-2.0.10-r1.ebuild | 49 +++
virtual/mpi/ChangeLog | 7 +-
virtual/mpi/mpi-2.0-r4.ebuild | 25 ++
52 files changed, 1624 insertions(+), 158 deletions(-)
