commit:     5d1f2bf882466a5ebb3977d062723081d25b1365
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 22 23:43:15 2024 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Mon Sep 23 00:15:49 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d1f2bf8

sci-biology/embassy-esim4: mark as LTO-unsafe

Upstream software has not released since 2013, stuck on CVS, with no
sourceforge activity since 7 years ago when they deleted some spam.

Closes: https://bugs.gentoo.org/862258
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 .../embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild        | 14 ++++++++++++--
 1 file changed, 12 insertions(+), 2 deletions(-)

diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild 
b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild
index ab0fee10dc58..9da13422f06e 100644
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
 EBO_DESCRIPTION="sim4 - Alignment of cDNA and genomic DNA"
 
-inherit autotools emboss-r3
+inherit autotools emboss-r3 flag-o-matic
 
 KEYWORDS="~amd64 ~x86 ~x86-linux"
 
@@ -16,3 +16,13 @@ src_prepare() {
        default
        eautoreconf
 }
+
+src_configure() {
+       # -Werror=lto-type-mismatch
+       # https://bugs.gentoo.org/862258
+       #
+       # Upstream is dead since 2013.
+       filter-lto
+
+       emboss-r3_src_configure
+}

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