Re: [gentoo-science] [sage-on-gentoo] dependencies conflict

Sun, 02 Jun 2013 04:40:59 -0700 

Quoting [email protected]:


Quoting [email protected]:


Quoting [email protected]:


  Hello, Francois!

On Sun, 02 Jun 2013 22:07:54 +1200
[email protected] wrote:


I think it may be because you have cython in your world file. Can you
try the following:
emerge --deselect cython


  The output of

    grep cython /var/lib/portage/world

is empty.


then try to merge again. If the problem persist I want the output of
emerge -ptuDv sage



$ emerge -ptuDv sage

These are the packages that would be merged, in reverse order:

Calculating dependencies... done!
[nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite" PYTHON_TARGETS="python2_7" [nomerge ] dev-lisp/ecls-12.12.1::sage-on-gentoo USE="X threads unicode -debug -emacs -gengc -precisegc" 
[ebuild     U  ]   dev-lisp/gentoo-init-1.0 [0.1] 0 kB
[nomerge       ] dev-lisp/gentoo-init-1.0 [0.1]
[nomerge ] dev-lisp/asdf-3.0.1:0/3.0.1 [1.89:0/0] USE="-doc% (-examples%)" [blocks b ] dev-lisp/asdf-binary-locations ("dev-lisp/asdf-binary-locations" is blocking dev-lisp/asdf-3.0.1) 
[uninstall     ]    dev-lisp/asdf-binary-locations-20061018
[ebuild  N     ]   dev-lisp/uiop-3.0.1  380 kB
[ebuild U ] dev-lisp/asdf-3.0.1:0/3.0.1 [1.89:0/0] USE="-doc% (-examples%)" 0 kB [ebuild U ] sci-mathematics/sage-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite" PYTHON_TARGETS="python2_7" 59,992 kB [ebuild U ] dev-python/cvxopt-1.1.6::sage-on-gentoo [1.1.5-r2::gentoo] USE="dsdp fftw glpk gsl -doc -examples" PYTHON_TARGETS="python2_7 python3_2%* -python2_6" 3,275 kB [ebuild U ] sci-mathematics/sage-doc-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="html pdf" 72,019 kB [ebuild U ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6% -python3_1% -python3_3%" 37,546 kB [ebuild U ] sci-libs/scipy-0.12.0 [0.11.0-r1] USE="-doc -sparse% {-test} (-umfpack%)" PYTHON_TARGETS="python2_7 python3_2%* -python2_5 -python2_6 -python3_3%" 8,883 kB [ebuild U ] sci-mathematics/sage-clib-5.9::sage-on-gentoo [5.8::sage-on-gentoo] 0 kB [ebuild U ] sci-mathematics/polybori-0.8.3::sage-on-gentoo [0.8.2-r4::sage-on-gentoo] USE="gd -doc" 2,128 kB [ebuild U ] dev-python/ipython-0.13.1-r1::sage-on-gentoo [0.13.1::sage-on-gentoo] USE="qt4 smp -doc -emacs -examples -matplotlib -mongodb -notebook -octave {-test} -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6% -python3_1%" 0 kB [ebuild U ] dev-python/pyzmq-13.1.0 [2.2.0.1-r1] USE="-examples -green% {-test}" PYTHON_TARGETS="python2_7 python3_2 -python2_6 -python3_1 -python3_3" 820 kB [ebuild U ] net-libs/zeromq-3.2.3 [3.2.2] USE="-pgm -static-libs {-test}" 2,025 kB [ebuild U ] dev-python/rpy-2.3.6 [2.3.4] USE="{-test}" PYTHON_TARGETS="python2_7" 183 kB [ebuild U ] dev-lang/R-3.0.1 [3.0.0] USE="X bash-completion cairo jpeg nls openmp png readline -doc -icu -java -lapack -minimal -perl (-prefix) -profile -static-libs -tiff -tk" 24,911 kB [ebuild U ] sci-mathematics/pari-2.5.4::sage-on-gentoo [2.5.3-r2::sage-on-gentoo] USE="X data gmp qt4 -doc -fltk" 2,659 kB [nomerge ] sci-libs/scipy-0.12.0 [0.11.0-r1] USE="-doc -sparse% {-test} (-umfpack%)" PYTHON_TARGETS="python2_7 python3_2%* -python2_5 -python2_6 -python3_3%" [ebuild U ] dev-python/imaging-1.1.7-r4 [1.1.7-r3] USE="jpeg truetype zlib -doc -examples -lcms -scanner {-test} -tiff -tk" PYTHON_TARGETS="python2_7 -python2_5 -python2_6" 0 kB [nomerge ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6% -python3_1% -python3_3%" [ebuild NS ] dev-python/pygobject-3.4.2-r1:3 [2.28.6-r53:2] USE="cairo threads -examples {-test}" PYTHON_TARGETS="python2_7 python3_2 -python2_6 -python3_1 -python3_3" 601 kB [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite" PYTHON_TARGETS="python2_7" [nomerge ] sci-mathematics/sage-notebook-0.10.4-r2::sage-on-gentoo USE="-java -server {-test}" PYTHON_TARGETS="python2_7" [nomerge ] dev-python/flask-autoindex-0.4.1-r1::sage-on-gentoo PYTHON_TARGETS="python2_7" [ebuild U ] dev-python/flask-0.9-r2 [0.9-r1] USE="-examples {-test}" PYTHON_TARGETS="python2_7 -pypy1_9 -pypy2_0 -python2_5 -python2_6" 0 kB [ebuild U ] dev-python/sqlalchemy-0.8.1 [0.8.0] USE="sqlite -doc -examples {-test} (-firebird%) (-mssql%) (-mysql%) (-postgres%)" PYTHON_TARGETS="python2_7 python3_2%* -pypy1_9% -pypy2_0% -python2_5% -python2_6 -python3_3%" 3,688 kB [ebuild UD ] dev-python/cython-0.19::sage-on-gentoo [0.19.1::sage-on-gentoo] USE="-doc {-test}" PYTHON_TARGETS="python2_7 python3_2 -python2_5 -python2_6 -python3_1 -python3_3" 1,350 kB [nomerge ] sci-mathematics/sage-notebook-0.10.4-r2::sage-on-gentoo USE="-java -server {-test}" PYTHON_TARGETS="python2_7" 
[nomerge       ]  dev-python/flask-babel-0.8  USE="-doc {-test}"
[nomerge ] dev-python/Babel-0.9.6-r1 PYTHON_TARGETS="python2_7 -pypy1_9 -pypy2_0 -python2_5 -python2_6" [ebuild U ] dev-python/pytz-2013b [2012j] PYTHON_TARGETS="python2_7 python3_2 -pypy1_9 -pypy2_0 -python2_5 -python2_6 -python3_1 -python3_3" 195 kB [nomerge ] media-sound/vorbis-tools-1.4.0 USE="flac nls ogg123 speex -kate" [nomerge ] media-libs/libao-1.1.0-r1 USE="alsa mmap nas -pulseaudio -static-libs" 
[nomerge       ]   media-libs/nas-1.9.3  USE="-doc -static-libs"
[ebuild U ] x11-libs/libXres-1.0.7 [1.0.6] USE="-static-libs" 277 kB [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite" PYTHON_TARGETS="python2_7" [ebuild U ] sci-mathematics/singular-3.1.5-r1::sage-on-gentoo [3.1.5::sage-on-gentoo] USE="python readline -boost -doc -emacs -examples {-test}" PYTHON_SINGLE_TARGET="python2_7%* -python2_6%" PYTHON_TARGETS="python2_7%* -python2_6%" 0 kB [ebuild U ] sci-mathematics/gmp-ecm-6.4.4-r2::sage-on-gentoo [6.4.4-r1::sage-on-gentoo] USE="custom-tune -blas -gwnum -openmp -static-libs {-test}" 0 kB [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite" PYTHON_TARGETS="python2_7" [nomerge ] dev-python/sympy-0.7.2-r2::sage-on-gentoo USE="latex opengl pdf png -doc -examples -gtk -imaging -ipython -mathml -pyglet {-test} -texmacs" PYTHON_TARGETS="python2_7 -python2_6" 
[nomerge       ]   dev-texlive/texlive-fontsextra-2012  USE="-doc -source"
[nomerge       ]    dev-texlive/texlive-basic-2012  USE="-doc -source"
[nomerge ] dev-texlive/texlive-documentation-base-2012 USE="-source" [nomerge ] app-text/texlive-core-2012-r1 USE="X -cjk -doc -source -tk -xetex" [ebuild U ] x11-libs/libXp-1.0.2 [1.0.1-r1] USE="-static-libs" ABI_X86="(64) -32 (-x32)" 292 kB [nomerge ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6% -python3_1% -python3_3%" 
[ebuild  N     ]  media-fonts/stix-fonts-1.0.0-r1  USE="X -doc" 2,697 kB
[nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite" PYTHON_TARGETS="python2_7" [nomerge ] dev-lang/R-3.0.1 [3.0.0] USE="X bash-completion cairo jpeg nls openmp png readline -doc -icu -java -lapack -minimal -perl (-prefix) -profile -static-libs -tiff -tk" [ebuild U ] dev-libs/libpcre-8.33:3 [8.32:3] USE="bzip2 cxx jit readline recursion-limit (unicode) zlib -libedit -pcre16 -pcre32% -static-libs" 1,408 kB [ebuild U ] sci-mathematics/sage-extcode-5.9::sage-on-gentoo [5.8::sage-on-gentoo] 12,026 kB [ebuild U ] sci-mathematics/sage-baselayout-5.9::sage-on-gentoo [5.8-r1::sage-on-gentoo] USE="X -debug -testsuite -tools" PYTHON_TARGETS="python2_7" 1,449 kB [blocks B ] dev-lisp/gentoo-init ("dev-lisp/gentoo-init" is blocking dev-lisp/asdf-3.0.1)
Total: 30 packages (26 upgrades, 1 downgrade, 2 new, 1 in new slot, 1 uninstall), Size of downloads: 238,793 kB 
Conflict: 2 blocks (1 unsatisfied)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.
(dev-lisp/gentoo-init-1.0::gentoo, ebuild scheduled for merge) pulled in by dev-lisp/gentoo-init required by (dev-lisp/ecls-12.12.1::sage-on-gentoo, installed) 

  (dev-lisp/asdf-3.0.1::gentoo, ebuild scheduled for merge) pulled in by
~dev-lisp/asdf-3.0.1 required by (dev-lisp/uiop-3.0.1::gentoo, ebuild scheduled for merge) >=dev-lisp/asdf-2.0 required by (dev-lisp/gentoo-init-1.0::gentoo, ebuild scheduled for merge) 




No cython there. I have just committed stuff for the lisp stuff. Martin Von
Gagern just spent the last 12 hours solving the maxima issue that was
preventing us to allow you to move to asdf-3.0.1. And I spent some time
adjusting the overlay so the dependencies allow you to do it [nay, forces you 
to do it - I will need to add a few more keywords].

can you sync the overlay and try again, please. And before merging you
may want
to unmerge ecm.


Just found I forgot to commit a patch. If you miss a patch, you'll have
to sync
again.


Big issue with maxima 5.29.1-r2, try 5.30 until I fix it, or upgrade all the
dependencies to 5.30 if it is too hard to fix.

Francois

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