On 01/11/2017 08:48 PM, [email protected] wrote: > > > > On 01/09/2017 12:56 PM, [email protected] > <mailto:[email protected]> wrote: > > > > On 01/09/2017 11:20 AM, [email protected] > <mailto:[email protected]> > > <mailto:[email protected] <mailto:[email protected]>> > wrote: > > > > > > > > > On 01/08/2017 11:22 AM, [email protected] > <mailto:[email protected]> > > <mailto:[email protected] <mailto:[email protected]>> > > > <mailto:[email protected] > <mailto:[email protected]> <mailto:[email protected] > <mailto:[email protected]>>> > > wrote: > > > > Thank you for your reply. > > > > Build.log is attached this mail. > > > > Can you find the error? > > > > > > > > Tkane > > > > > > > > On 01/08/2017 12:01 AM, [email protected] > <mailto:[email protected]> > > <mailto:[email protected] <mailto:[email protected]>> > > > <mailto:[email protected] > <mailto:[email protected]> <mailto:[email protected] > <mailto:[email protected]>>> > > > > <mailto:[email protected] > <mailto:[email protected]> > > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > > <mailto:[email protected] <mailto:[email protected]>>>> > > > wrote: > > > > > Hello, > > > > > I want to use dev-lang/R on gentoo/prefix. > > > > > But failed to build libblas as follows. > > > > > How can I fix this failure? > > > > > > > > > > cd > > > > > > > > > > > > > > > > /home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build/BLAS/SRC > > > > > && /home/kaneko/gentoo/usr/bin/cmake -E > > cmake_symlink_library > > > > > ../../lib/libblas.so.3.6.0 ../../lib/libblas.so.3 > > > ../../lib/libblas.so > > > > > make[2]: *** > [BLAS/SRC/CMakeFiles/blas.dir/build.make:4002: > > > > > lib/libblas.so] Error 1 > > > > > make[2]: *** Deleting file 'lib/libblas.so' > > > > > make[2]: Leaving directory > > > > > > > > > > > > > > > > '/home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build' > > > > > make[1]: *** [CMakeFiles/Makefile2:1004: > > > > > BLAS/SRC/CMakeFiles/blas.dir/all] Error 2 > > > > > make[1]: Leaving directory > > > > > > > > > > > > > > > > '/home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build' > > > > > make: *** [Makefile:161: all] Error 2 > > > > > make: Leaving directory > > > > > > > > > > > > > > > > '/home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build/BLAS' > > > > > * ERROR: > sci-libs/blas-reference-20151113-r1::gentoo failed > > > (compile > > > > > phase): > > > > > * emake failed > > > > > > > > > > emerge --info text file is attached. > > > > > > > > > > Tkane > > > > > > > > It doesn't look like the error is contained in the > snipped > > you've > > > > provided, it's probably further up in the build log. > > > > > > > > Dan > > > > > > > > > > > > > > > > > > Have you checked the output of `eselect blas` ? It looks > like it's > > > failing in the linking stage, leading me to wonder if an > > implementation > > > is selected. > > > > > > Dan > > > > > > Thank you for confirming various things. > > > The result of eselect is below. > > > > > > $ eselect blas > > > Usage: eselect blas <action> <options> > > > > > > Standard actions: > > > help Display help text > > > usage Display usage information > > > version Display version information > > > > > > Extra actions: > > > add <libdir> <file> <implementation> > > > Add a new BLAS implementation > > > libdir library directory where BLAS > > > implementation is installed (lib, lib64, etc.) > > > file path to file containing symlink map > > > implementation name of the BLAS implementation > > > list List all installed BLAS > implementations > > > set <implementation> Activate one of the installed BLAS > > > implementations > > > implementation implementation name or number (from > > 'list' > > > action) > > > show Print the currently active BLAS > > implementation > > > $ eselect blas list > > > $ eselect blas show > > > > > > > > > Tkane > > > > > > > > > > > > Have you tried the stable version of sci-libs/blas-reference? > > > > Dan > > > > > > I do not understand it very well, > > I think sci-libs/blas-reference-20151113-r1 is a stable version. > > > > $ eix -e sci-libs/blas-reference > > * sci-libs/blas-reference > > Available versions: 20070226-r4 20151113-r1 {doc} > > Homepage: http://www.netlib.org/blas/ > > Description: Basic Linear Algebra Subprograms F77 > reference > > implementations > > > > Tkane > > > > > > > > > > I don't use eix, but the one you are trying to install (20151113-r1) is > marked unstable: > > $ eshowkw sci-libs/blas-reference > Keywords for sci-libs/blas-reference: > | | u | > | a a p s a n r | n | > | l m h i p p m r m i i s | e u s | r > | p d a p a p c a x i m 6 o s 3 | a s l | e > | h 6 r p 6 p 6 r 8 p 6 8 s c 9 s | p e o | p > | a 4 m a 4 c 4 c 6 s 4 k 2 v 0 h | i d t | o > ------------+---------------------------------+-------+------- > 20070226-r4 | + + + + + + + + + ~ o o o o ~ o | 5 o 0 | gentoo > 20151113-r1 | ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ o o o o ~ o | 6 o | gentoo > > > Dan > > Thank you. > I understood that sci-libs/blas-reference-20151113-r1 is not stable. > So I added a line in package.mask file as follows. > >>=sci-libs/blas-reference-20151113-r1 > > And I try emerge --ask dev-lang/R, > sci-libs/acml-4.1.0-r2 is required instead of blas-reference-20151113-r1. > > But acml-4-1-0-gfortran-64bit.tgz download link missing, > I cannot download acml-4-1-0-gfortran-64bit.tgz. > > How do I use dev-lang/R? > > $ emerge --ask dev-lang/R > > * IMPORTANT: 10 news items need reading for repository 'gentoo'. > * Use eselect news read to view new items. > > > * IMPORTANT: 7 config files in '/home/kaneko/gentoo/etc/portage' need > updating. > * See the CONFIGURATION FILES and CONFIGURATION FILES UPDATE TOOLS > * sections of the emerge man page to learn how to update config files. > > These are the packages that would be merged, in order: > > Calculating dependencies... done! > [ebuild N F ] sci-libs/acml-4.1.0-r2 USE="openmp -doc -examples > -gfortran (-ifc) -int64 {-test}" > [ebuild N ] virtual/blas-3.6 > [ebuild N ] dev-lang/R-3.3.2 USE="nls openmp (prefix) readline -X > -cairo -doc -icu -java -jpeg -lapack -minimal -perl -png -profile > -static-libs -tiff -tk" > > Fetch instructions for sci-libs/acml-4.1.0-r2: > * Please download the ACML from: > * http://developer.amd.com/acml.jsp > * and place it in /home/kaneko/gentoo/usr/portage/distfiles. > * The previous versions could be found at > * http://developer.amd.com/acmlarchive.jsp > * SRC=acml-4-1-0-gfortran-64bit.tgz > * amd64? ( > * ifc? ( acml-4-1-0-ifort-64bit.tgz > * int64? ( acml-4-1-0-ifort-64bit-int64.tgz ) ) > * gfortran? ( acml-4-1-0-gfortran-64bit.tgz > * int64? ( acml-4-1-0-gfortran-64bit-int64.tgz ) ) > * !ifc? ( > * !gfortran? ( acml-4-1-0-gfortran-64bit.tgz > * int64? ( > acml-4-1-0-gfortran-64bit-int64.tgz ) ) ) ) > * x86? ( > * ifc? ( acml-4-1-0-ifort-32bit.tgz ) > * gfortran? ( acml-4-1-0-gfortran-32bit.tgz ) > * !ifc? ( !gfortran? ( acml-4-1-0-gfortran-32bit.tgz ) ) ) > > Would you like to merge these packages? [Yes/No] no > > Quitting. > > Tkane > > > >
Is there a specific reason you're trying to use the unstable versions? I just installed the stable versions with no issues: # emerge -pv R These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild N ] app-eselect/eselect-blas-0.1::gentoo 0 KiB [ebuild N ] sci-libs/blas-reference-20070226-r4::gentoo USE="-doc" 0 KiB [ebuild N ] virtual/blas-1.0::gentoo 0 KiB [ebuild N ] dev-lang/R-3.2.2::gentoo USE="X cairo jpeg nls openmp png readline tiff -doc -icu -java -lapack -minimal -perl (-prefix) -profile -static-libs -tk" 0 KiB Total: 4 packages (4 new), Size of downloads: 0 KiB Dan
