[Geoserver-devel] [JIRA] (GEOS-7578) OGR UnsatisfiedLinkError with Java 1.8

Torben Barsballe (JIRA) Fri, 10 Jun 2016 16:38:23 -0700

Title: Message Title

Issue Type:	Bug
Assignee:	Unassigned
Created:	11/Jun/16 1:35 AM
Environment:	Centos 6.8, GDAL 1.11.2
Priority:	Medium
Reporter:	Torben Barsballe

I am testing the OGR Store (Using gt-ogr-jni) with OpenFileGDB (http://frap.cdf.ca.gov/data/statewide/cdfadmin13_1.zip) on GeoServer.

All of the following tests use CentOS release 6.8, and GDAL 1.11.2.

With the GeoServer 2.8.0 WAR, tomcat-7.0.69, and openjdk-1.7.0.101, OGR works fine. I am able to add the store and view it in the OL preview.

With the GeoServer 2.8.0 WAR, tomcat-8.0.35, and openjdk-1.7.0.101 OR openjdk-1.8.0.91-1.b14.el6 OR Oracle jdk1.8.0_92, I am still able to add the store and publish layers. However, if I try to view it in the OL preview (or any other WMS format), I get the following error:

 
                                                                Caused by: java.lang.Exception: java.lang.UnsatisfiedLinkError: org.gdal.ogr.ogrJNI.Layer_SetSpatialFilter(JLorg/gdal/ogr/Layer;JLorg/gdal/ogr/Geometry;)V
        at org.geotools.renderer.lite.StreamingRenderer.fireErrorEvent(StreamingRenderer.java:495)
        at org.geotools.renderer.lite.StreamingRenderer.paint(StreamingRenderer.java:835)
        at org.geoserver.wms.map.RenderedImageMapOutputFormat.produceMap(RenderedImageMapOutputFormat.java:548)
        ... 129 more
Caused by: java.lang.UnsatisfiedLinkError: org.gdal.ogr.ogrJNI.Layer_SetSpatialFilter(JLorg/gdal/ogr/Layer;JLorg/gdal/ogr/Geometry;)V
        at org.gdal.ogr.ogrJNI.Layer_SetSpatialFilter(Native Method)
        at org.gdal.ogr.Layer.SetSpatialFilter(Layer.java:87)
        at org.geotools.data.ogr.jni.JniOGR.LayerSetSpatialFilter(JniOGR.java:257)
        at org.geotools.data.ogr.OGRFeatureSource.setLayerFilters(OGRFeatureSource.java:124)
        at org.geotools.data.ogr.OGRFeatureSource.getReaderInternal(OGRFeatureSource.java:230)
        at org.geotools.data.ogr.OGRFeatureSource.getReaderInternal(OGRFeatureSource.java:167)
        at org.geotools.data.store.ContentFeatureSource.getReader(ContentFeatureSource.java:634)
        at org.geotools.data.store.ContentFeatureCollection.features(ContentFeatureCollection.java:173)
        at org.geotools.data.store.ContentFeatureCollection.features(ContentFeatureCollection.java:58)
        at org.geotools.data.crs.ForceCoordinateSystemFeatureResults.openIterator(ForceCoordinateSystemFeatureResults.java:96)
        at org.geotools.feature.collection.AbstractFeatureCollection.features(AbstractFeatureCollection.java:69)
        at org.geotools.feature.collection.AbstractFeatureCollection.features(AbstractFeatureCollection.java:53)
        at org.geotools.renderer.lite.StreamingRenderer.drawPlain(StreamingRenderer.java:2282)
        at org.geotools.renderer.lite.StreamingRenderer.processStylers(StreamingRenderer.java:1917)
        at org.geotools.renderer.lite.StreamingRenderer.paint(StreamingRenderer.java:833)
        ... 130 more
 
                                                            

Non-OGR GDAL formats (Raster) work fine.
GeoServer 2.9.0 on Tomcat 8 / Java 8 shows the same behavior.

With the GeoServer 2.8.0 WAR, tomcat-7.0.69, and openjdk-1.8.0.91-1.b14.el6 OR Oracle jdk1.8.0_92, all GDAL data formats fail to load. If I enable DEBUG level logging, I see the following:

 
                                                                2016-06-10 20:39:16,059 DEBUG [data.ogr] - Error initializing GDAL/OGR library
java.lang.UnsatisfiedLinkError: Native Library /usr/lib64/libgdaljni.so already loaded in another classloader
        at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1907)
        at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1857)
        at java.lang.Runtime.loadLibrary0(Runtime.java:870)
        at java.lang.System.loadLibrary(System.java:1122)
        at org.geotools.data.ogr.jni.JniOGRDataStoreFactory.doIsAvailable(JniOGRDataStoreFactory.java:15)
        at org.geotools.data.ogr.OGRDataStoreFactory.isAvailable(OGRDataStoreFactory.java:165)
        at org.geotools.data.ogr.OGRDataStoreFactory.isAvailable(OGRDataStoreFactory.java:153)
        at org.geotools.data.DataAccessFinder.getAvailableDataStores(DataAccessFinder.java:212)
        at org.geotools.data.DataStoreFinder.getAvailableDataStores(DataStoreFinder.java:116)
        at org.geotools.data.DataAccessFinder.getAvailableDataStores(DataAccessFinder.java:195)
        at org.vfny.geoserver.util.DataStoreUtils.getAvailableDataStoreFactories(DataStoreUtils.java:343)
        at org.vfny.geoserver.util.DataStoreUtils.aquireFactory(DataStoreUtils.java:185)
        at org.geoserver.catalog.ResourcePool.getDataStoreFactory(ResourcePool.java:500)
        at org.geoserver.security.password.ConfigurationPasswordEncryptionHelper.getEncryptedFields(ConfigurationPasswordEncryptionHelper.java:73)
        at org.geoserver.security.password.ConfigurationPasswordEncryptionHelper.decode(ConfigurationPasswordEncryptionHelper.java:148)
        at org.geoserver.config.util.XStreamPersister$StoreInfoConverter.doUnmarshal(XStreamPersister.java:1591)
        at com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter.unmarshal(AbstractReflectionConverter.java:257)
        at com.thoughtworks.xstream.core.TreeUnmarshaller.convert(TreeUnmarshaller.java:72)
        at com.thoughtworks.xstream.core.TreeUnmarshaller.convertAnother(TreeUnmarshaller.java:66)
        at com.thoughtworks.xstream.core.TreeUnmarshaller.convertAnother(TreeUnmarshaller.java:50)
        at com.thoughtworks.xstream.core.TreeUnmarshaller.start(TreeUnmarshaller.java:134)
        at com.thoughtworks.xstream.core.AbstractTreeMarshallingStrategy.unmarshal(AbstractTreeMarshallingStrategy.java:32)
        at com.thoughtworks.xstream.XStream.unmarshal(XStream.java:1185)
        at com.thoughtworks.xstream.XStream.unmarshal(XStream.java:1169)
        at com.thoughtworks.xstream.XStream.fromXML(XStream.java:1049)
        at org.geoserver.config.util.XStreamPersister.load(XStreamPersister.java:592)
        at org.geoserver.config.GeoServerLoader.depersist(GeoServerLoader.java:755)
        at org.geoserver.config.GeoServerLoader.readCatalog(GeoServerLoader.java:347)
        at org.geoserver.config.GeoServerLoader.readCatalog(GeoServerLoader.java:226)
        at org.geoserver.config.DefaultGeoServerLoader.loadCatalog(DefaultGeoServerLoader.java:36)
        at org.geoserver.config.GeoServerLoader.postProcessBeforeInitialization(GeoServerLoader.java:112)
        at org.geoserver.config.GeoServerLoaderProxy.postProcessBeforeInitialization(GeoServerLoaderProxy.java:59)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:394)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1448)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:519)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:323)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:107)
        at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:630)
        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:148)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:284)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:323)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:107)
        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:148)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:323)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:107)
        at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:630)
        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:148)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:607)
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:925)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:472)
        at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:388)
        at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:293)
        at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:111)
        at org.geoserver.platform.GeoServerContextLoaderListener.contextInitialized(GeoServerContextLoaderListener.java:23)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068)
        at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652)
        at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1260)
        at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:2002)
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
 
                                                            

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[Geoserver-devel] [JIRA] (GEOS-7578) OGR UnsatisfiedLinkError with Java 1.8

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