You don't have to do anything within Netbeans.  If you're not seeing
the docs for the geotools functions then the things to check are:

1) Did you give the jar a name that ends in javadoc.jar ?  e.g.
gt2-2.4.4-doc.javadoc.jar

2) Check the jar's contents from the command line by:
jar -tf yourfile.javadoc.jar
This will spit out a table of contents.  You should see hundreds of html files.

3) Make sure that it is in your repository correctly:
e.g.  yourhomedir/.m2/repository/org/geotools/javadoc.jars/yourfile.javadoc.jar

In particular, make sure that the parent directory is called
"javadoc.jars" (note the plural)

I've tried it at this end with the 2.4.4 docs and it works in Netbeans 6.1

Hope this helps

Michael

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