I'm not sure if this is relevant but keep in mind also that PostGIS is
using GEOS, the C++ port of JTS, for its geometry operations which
will be faster than the Java JTS routines called by GeoTools.

Also, for repeated tests against a single Geometry you could check out
the JTS PreparedGeometry class which can sometimes make repeated
operations a lot faster...

http://tsusiatsoftware.net/jts/javadoc/com/vividsolutions/jts/geom/prep/PreparedGeometry.html

Michael

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