I think what you may be looking for is a spatial database (such as PostGIS or 
using GeoTools with a pure java database like H2?)

GeoDatabase is a specific product and not a general class of software.
Jody

On 29/09/2010, at 2:26 AM, Jakub Rojek wrote:

> Hi, 
> 
> I design a geodatabase for my project but I would like to do it in good way. 
> The problem is that I did not find anything about "building: geodatabase 
> except some articles from ESRI. I check some literature, which deals with 
> open source GIS software, but there was not too much about this topic. If you 
> could give me some tips, it would be highly appreciated. 
> 
> Cheers Kuba 
> 
> 
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