Hello, I am a new user of GetFem++, working with the matlab interface. It seems very clearly structured. Thanks for the good job.
I am beginning with simple cases, such like the attached test2.m. However, it crashes during the assembling of the Dirichlet condition. I do not see why: the syntax seems ok and I put the same mesh_fem structure for both the multiplier and the variable. The reason is certainly very simple but I cannot find out why.
Can you help me ? Thanks-- Mai
Code:
------------------------------------------------------------------
gf_workspace('clear all');
L=100;H=100;
m=gfMesh('regular simplices',0:10:L, 0:10:H);
mfd=gfMeshFem(m,1);
mfd.set('fem',gfFem('FEM_PK(2,1)'));
mim=gf_mesh_im(m,gf_integ('IM_TRIANGLE(3)'));
pts=m.pts;
top_pid=find(abs(pts(2,:)-L)<=1e-6);
bot_pid=find(abs(pts(2,:)-0)<=1e-6);
top =gf_mesh_get(m,'faces from pid',top_pid);
bot =gf_mesh_get(m,'faces from pid',bot_pid);
all=gf_mesh_get(m,'outer faces');
m.set('region',101,top);
m.set('region',102,bot);
m.set('region',103,setdiff(all',union(top',bot','rows'),'rows')');
gf_plot_mesh(m,'regions',[103]);
md=gf_model('real');
gf_model_set(md,'add fem variable','V',mfd);
gf_model_set(md,'add Laplacian brick',mim,'V');
gf_model_set(md,'add initialized data','V0',0);
gf_model_set(md,'add initialized data','V1',1);
gf_model_set(md,'add initialized data','Q0',0);
disp('1')
gf_model_set(md,'add Dirichlet condition with multipliers',mim,'V',mfd,
101,'V0');
disp('2')
gf_model_set(md,'add Dirichlet condition with multipliers',mim,'V',mfd,
102,'V1');
disp('3')
gf_model_set(md,'add normal source term brick',mim,'V','Q0',103);
disp('solve')
gf_model_get(md,'solve');
------------------------------------------------------------------
Call:
-------------------------------------------------------------------
$ matlab -nojvm
< M A T L A B >
Copyright 1984-2007 The MathWorks, Inc.
Version 7.5.0.338 (R2007b)
August 9, 2007
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> addpath(genpath('/Applications/MATLAB_R2007b/toolbox/GetFem'))
>> test2
1
2
3
solve
Trace 2 in getfem_models.cc, line 1497: Source term assembly for
Dirichlet condition
Assertion failed: (rn.size() == s.size()), function
update_childs_required_shape, file getfem_assembling_tensors.cc, line
153.
Abort trap ----------------------------------------------------------------------- Full Crash report is attached, but I put the line concerning GetFem++ : ------------------------------------------------------------------ Thread 1 Crashed:0 libSystem.B.dylib 0x92979fd6 usleep$NOCANCEL $UNIX2003 + 0
1 libSystem.B.dylib 0x92991685 abort + 85 2 libSystem.B.dylib 0x929863db __assert_rtn + 1013 gf_matlab.mexmaci 0x17460aa6 getfem::ATN_reduced_tensor::update_childs_required_shape() + 1750 4 gf_matlab.mexmaci 0x1743df54 getfem::generic_assembly::exec(unsigned long, unsigned char) + 340 5 gf_matlab.mexmaci 0x1744aee6 getfem::generic_assembly::assembly(getfem::mesh_region const&) + 1910 6 gf_matlab.mexmaci 0x1707c221 void getfem::asm_real_or_complex_1_param_<std::vector<double, std::allocator<double> >, std::vector<double, std::allocator<double> >, double>(std::vector<double, std::allocator<double> > const&, getfem::mesh_im const&, getfem::mesh_fem const&, getfem::mesh_fem const&, std::vector<double, std::allocator<double> > const&, getfem::mesh_region const&, char const*, double) + 337 7 gf_matlab.mexmaci 0x174d6e04 getfem ::Dirichlet_condition_brick::asm_real_tangent_terms(getfem::model const&, unsigned long, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<getfem::mesh_im const*, std::allocator<getfem::mesh_im const*> > const&, std::vector<gmm::col_matrix<gmm::wsvector<double> >, std::allocator<gmm::col_matrix<gmm::wsvector<double> > > >&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, unsigned long, getfem::model::build_version) const + 5268 8 gf_matlab.mexmaci 0x17488727 getfem::model::brick_call(unsigned long, getfem::model::build_version, unsigned long) const + 295 9 gf_matlab.mexmaci 0x174889e0 getfem::model::update_brick(unsigned long, getfem::model::build_version) const + 656 10 gf_matlab.mexmaci 0x17492f33 getfem::model::actualize_sizes() const + 4355 11 gf_matlab.mexmaci 0x1716acd8 std ::auto_ptr <getfem::abstract_linear_solver<gmm::col_matrix<gmm::wsvector<double> >, std::vector<double, std::allocator<double> > > > getfem::default_linear_solver<gmm::col_matrix<gmm::wsvector<double> >, std::vector<double, std::allocator<double> > >(getfem::model const&) + 312 12 gf_matlab.mexmaci 0x1716bc29 std ::auto_ptr <getfem::abstract_linear_solver<gmm::col_matrix<gmm::wsvector<double> >, std::vector<double, std::allocator<double> > > > getfem::select_linear_solver<gmm::col_matrix<gmm::wsvector<double> >, std::vector<double, std::allocator<double> > >(getfem::model const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) + 1097 13 gf_matlab.mexmaci 0x17169f25 gf_model_get(getfemint::mexargs_in&, getfemint::mexargs_out&) + 9029 14 gf_matlab.mexmaci 0x16f7d9e5 getfem_interface_main + 6101 15 gf_matlab.mexmaci 0x16f791e5 call_getfem_interface + 149
16 gf_matlab.mexmaci 0x16f79488 mexFunction + 248 ------------------------------------------------------------------
test2.m
Description: Binary data
Process: MATLAB [1935]
Path:
/Applications/MATLAB_R2007b/bin/maci/MATLAB.app/Contents/MacOS/MATLAB
Identifier: com.mathworks.matlab
Version: MATLAB version 7.1 (2.1)
Code Type: X86 (Native)
Parent Process: bash [1851]
Interval Since Last Report: 2134 sec
Crashes Since Last Report: 1
Per-App Interval Since Last Report: 64 sec
Per-App Crashes Since Last Report: 1
Date/Time: 2010-03-29 12:17:33.729 +0200
OS Version: Mac OS X 10.5.8 (9L30)
Report Version: 6
Anonymous UUID: 948F4965-ECC6-4F5C-8B8C-17349176B34F
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread: 1
Thread 0:
0 libSystem.B.dylib 0x928a5286 mach_msg_trap + 10
1 libSystem.B.dylib 0x928aca7c mach_msg + 72
2 com.apple.CoreFoundation 0x90a1fe7e CFRunLoopRunSpecific + 1790
3 com.apple.CoreFoundation 0x90a20aa8 CFRunLoopRunInMode + 88
4 com.apple.HIToolbox 0x90d282ac RunCurrentEventLoopInMode +
283
5 com.apple.HIToolbox 0x90d280c5 ReceiveNextEventCommon + 374
6 com.apple.HIToolbox 0x90d86b56 _AcquireNextEvent + 58
7 com.apple.HIToolbox 0x90d852b3 RunApplicationEventLoop + 207
8 libmwmcr.dylib 0x0046dcc4 mcr_create_2ndThread(void*
(*)(void*), void*, bool) + 308
9 libmwmcr.dylib 0x0046ddf0 mcr_run_main(int (*)(int,
char**), int, char**) + 236
10 com.mathworks.matlab 0x0000279c start + 1948
11 com.mathworks.matlab 0x00002102 start + 258
12 com.mathworks.matlab 0x00002029 start + 41
Thread 1 Crashed:
0 libSystem.B.dylib 0x92979fd6 usleep$NOCANCEL$UNIX2003 + 0
1 libSystem.B.dylib 0x92991685 abort + 85
2 libSystem.B.dylib 0x929863db __assert_rtn + 101
3 gf_matlab.mexmaci 0x17460aa6
getfem::ATN_reduced_tensor::update_childs_required_shape() + 1750
4 gf_matlab.mexmaci 0x1743df54
getfem::generic_assembly::exec(unsigned long, unsigned char) + 340
5 gf_matlab.mexmaci 0x1744aee6
getfem::generic_assembly::assembly(getfem::mesh_region const&) + 1910
6 gf_matlab.mexmaci 0x1707c221 void
getfem::asm_real_or_complex_1_param_<std::vector<double, std::allocator<double>
>, std::vector<double, std::allocator<double> >, double>(std::vector<double,
std::allocator<double> > const&, getfem::mesh_im const&, getfem::mesh_fem
const&, getfem::mesh_fem const&, std::vector<double, std::allocator<double> >
const&, getfem::mesh_region const&, char const*, double) + 337
7 gf_matlab.mexmaci 0x174d6e04
getfem::Dirichlet_condition_brick::asm_real_tangent_terms(getfem::model const&,
unsigned long, std::vector<std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > > const&,
std::vector<std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > > const&,
std::vector<getfem::mesh_im const*, std::allocator<getfem::mesh_im const*> >
const&, std::vector<gmm::col_matrix<gmm::wsvector<double> >,
std::allocator<gmm::col_matrix<gmm::wsvector<double> > > >&,
std::vector<std::vector<double, std::allocator<double> >,
std::allocator<std::vector<double, std::allocator<double> > > >&,
std::vector<std::vector<double, std::allocator<double> >,
std::allocator<std::vector<double, std::allocator<double> > > >&, unsigned
long, getfem::model::build_version) const + 5268
8 gf_matlab.mexmaci 0x17488727
getfem::model::brick_call(unsigned long, getfem::model::build_version, unsigned
long) const + 295
9 gf_matlab.mexmaci 0x174889e0
getfem::model::update_brick(unsigned long, getfem::model::build_version) const
+ 656
10 gf_matlab.mexmaci 0x17492f33
getfem::model::actualize_sizes() const + 4355
11 gf_matlab.mexmaci 0x1716acd8
std::auto_ptr<getfem::abstract_linear_solver<gmm::col_matrix<gmm::wsvector<double>
>, std::vector<double, std::allocator<double> > > >
getfem::default_linear_solver<gmm::col_matrix<gmm::wsvector<double> >,
std::vector<double, std::allocator<double> > >(getfem::model const&) + 312
12 gf_matlab.mexmaci 0x1716bc29
std::auto_ptr<getfem::abstract_linear_solver<gmm::col_matrix<gmm::wsvector<double>
>, std::vector<double, std::allocator<double> > > >
getfem::select_linear_solver<gmm::col_matrix<gmm::wsvector<double> >,
std::vector<double, std::allocator<double> > >(getfem::model const&,
std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)
+ 1097
13 gf_matlab.mexmaci 0x17169f25
gf_model_get(getfemint::mexargs_in&, getfemint::mexargs_out&) + 9029
14 gf_matlab.mexmaci 0x16f7d9e5 getfem_interface_main + 6101
15 gf_matlab.mexmaci 0x16f791e5 call_getfem_interface + 149
16 gf_matlab.mexmaci 0x16f79488 mexFunction + 248
17 libmex.dylib 0x012f4ddc mexRunMexFile + 102
18 libmex.dylib 0x012f3a82
inSwapMexfileReader(MexFileReader**) + 616
19 libmex.dylib 0x012f45c1 __constructor_lm_mexglx + 333
20 libmwm_dispatcher.dylib 0x004c4e08 Mfh_file::dispatch_fh(int,
mxArray_tag**, int, mxArray_tag**) + 188
21 libmwm_interpreter.dylib 0x0054fffc inRunLoadObjFunction + 8926
22 libmwm_interpreter.dylib 0x005332ae inRegisterLineNoHook + 7004
23 libmwm_interpreter.dylib 0x0053533d inRegisterLineNoHook + 15339
24 libmwm_interpreter.dylib 0x006344b7
MathWorks::System::FatalException::~FatalException() + 203
25 libmwm_interpreter.dylib 0x00535ed9 inRegisterLineNoHook + 18311
26 libmwm_interpreter.dylib 0x005368d4 inRegisterLineNoHook + 20866
27 libmwm_interpreter.dylib 0x0055c168 inConvertToLHSType + 9346
28 libmwm_interpreter.dylib 0x00540fa0 inTriggerDebugEvent + 1972
29 libmwm_dispatcher.dylib 0x004c4e08 Mfh_file::dispatch_fh(int,
mxArray_tag**, int, mxArray_tag**) + 188
30 libmwm_interpreter.dylib 0x0054fffc inRunLoadObjFunction + 8926
31 libmwm_interpreter.dylib 0x00523c08
QueryMLFcnTable_m_interpreter + 10854
32 libmwm_interpreter.dylib 0x005354db inRegisterLineNoHook + 15753
33 libmwm_interpreter.dylib 0x006344b7
MathWorks::System::FatalException::~FatalException() + 203
34 libmwm_interpreter.dylib 0x00535ed9 inRegisterLineNoHook + 18311
35 libmwm_interpreter.dylib 0x005368d4 inRegisterLineNoHook + 20866
36 libmwm_interpreter.dylib 0x0055c168 inConvertToLHSType + 9346
37 libmwm_interpreter.dylib 0x00540fa0 inTriggerDebugEvent + 1972
38 libmwm_dispatcher.dylib 0x004c4e08 Mfh_file::dispatch_fh(int,
mxArray_tag**, int, mxArray_tag**) + 188
39 libmwm_interpreter.dylib 0x0054fffc inRunLoadObjFunction + 8926
40 libmwm_interpreter.dylib 0x005332ae inRegisterLineNoHook + 7004
41 libmwm_interpreter.dylib 0x0053533d inRegisterLineNoHook + 15339
42 libmwm_interpreter.dylib 0x006344b7
MathWorks::System::FatalException::~FatalException() + 203
43 libmwm_interpreter.dylib 0x00535ed9 inRegisterLineNoHook + 18311
44 libmwm_interpreter.dylib 0x00536518 inRegisterLineNoHook + 19910
45 libmwm_interpreter.dylib 0x0052f7cf inIsCodeBlockComplete + 3573
46 libmwm_interpreter.dylib 0x005304c5 inAnonymousFunction + 791
47 libmwbridge.dylib 0x0044f413 mnInitializeParser(char
const*, char const**) + 317
48 libmwbridge.dylib 0x0044f98c mnParser + 500
49 libmwmcr.dylib 0x0046facf mcrInstance::mnParser() + 39
50 com.mathworks.matlab 0x0000290f start + 2319
51 libmwmcr.dylib 0x0046db85 mcr_run_on_cfrunloop(void
(*)(void*), void*) + 141
52 libSystem.B.dylib 0x928d6155 _pthread_start + 321
53 libSystem.B.dylib 0x928d6012 thread_start + 34
Thread 1 crashed with X86 Thread State (32-bit):
eax: 0x00000000 ebx: 0x92991639 ecx: 0xb0e259fc edx: 0x92912e42
edi: 0x16aad5a4 esi: 0x175c9049 ebp: 0xb0e25a68 esp: 0xb0e25a3c
ss: 0x0000001f efl: 0x00010286 eip: 0x92979fd6 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x0000001f gs: 0x00000037
cr2: 0x0094c784
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